hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-21415598/chunk_1/iprscan-20080809-21415598.nocrc
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Query sequence: fh18168
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01575.9.fs    MaoC like domain                        182.0    5.9e-53   1
PF01575.9.ls    MaoC like domain                        183.9    3.6e-52   1
PF02036.7.fs    SCP-2 sterol transfer family            101.2    6.1e-31   1
PF02036.7.ls    SCP-2 sterol transfer family             76.4    8.1e-20   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01575.9.fs      1/1     235   356 ..     1   135 []   182.0  5.9e-53
PF01575.9.ls      1/1     235   356 ..     1   135 []   183.9  3.6e-52
PF02036.7.fs      1/1     379   462 ..     1    87 [.   101.2  6.1e-31
PF02036.7.ls      1/1     379   471 .]     1   114 []    76.4  8.1e-20

Alignments of top-scoring domains:
PF01575.9.fs: domain 1 of 1, from 235 to 356: score 182.0, E = 5.9e-53
                   *->dfasaigeppdfekpvtvtLfkAeadialFAlvSGDhNPIHvDpeaf
                       +++++++ppd++++ t++      ++al++l SGD+NP+H+Dp+ f
     fh18168   235    VAVAIPNRPPDAVLTDTTS----LNQAALYRL-SGDWNPLHIDPN-F 275  

                   AklagFggpIaHGmltlaivaglveeqggdngveetvvaryggwsvrFtg
                   A+lagF++pI+HG++t++++a+ v +q++dn+v     +r++++++rF++
     fh18168   276 ASLAGFDKPILHGLCTFGFSARRVLQQFADNDV-----SRFKAIKARFAK 320  

                   PVfpGdtlrvevevvgvkrdgkletktvettvgvtvga<-*
                   PV+pG+tl++e++++g +r+++ +tk+ et+++v+++a   
     fh18168   321 PVYPGQTLQTEMWKEG-NRIHF-QTKVQETGDIVISNA    356  

PF01575.9.ls: domain 1 of 1, from 235 to 356: score 183.9, E = 3.6e-52
                   *->dfasaigeppdfekpvtvtLfkAeadialFAlvSGDhNPIHvDpeaf
                       +++++++ppd++++ t++      ++al++l SGD+NP+H+Dp+ f
     fh18168   235    VAVAIPNRPPDAVLTDTTS----LNQAALYRL-SGDWNPLHIDPN-F 275  

                   AklagFggpIaHGmltlaivaglveeqggdngveetvvaryggwsvrFtg
                   A+lagF++pI+HG++t++++a+ v +q++dn+v     +r++++++rF++
     fh18168   276 ASLAGFDKPILHGLCTFGFSARRVLQQFADNDV-----SRFKAIKARFAK 320  

                   PVfpGdtlrvevevvgvkrdgkletktvettvgvtvga<-*
                   PV+pG+tl++e++++g +r+++ +tk+ et+++v+++a   
     fh18168   321 PVYPGQTLQTEMWKEG-NRIHF-QTKVQETGDIVISNA    356  

PF02036.7.fs: domain 1 of 1, from 379 to 462: score 101.2, E = 6.1e-31
                   *->saplfqeleealkellkseelvkkvgailefnvkdelkgkedawtiD
                      s  +f+e++++lk+++   e vkkv+a++e++++++ ++  ++wtiD
     fh18168   379    STFVFEEIGRRLKDIG--PEVVKKVNAVFEWHITKG-GNIGAKWTID 422  

                   lknGkgvvygggaknkaDvtftisdedFlklltgklgPqt<-*
                   lk+G+g vy+g+ak+ aD+t+++sdedF++++ gkl+Pq+   
     fh18168   423 LKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQK    462  

PF02036.7.ls: domain 1 of 1, from 379 to 471: score 76.4, E = 8.1e-20
                   *->saplfqeleealkellkseelvkkvgailefnvkdelkgkedawtiD
                      s  +f+e++++lk+++   e vkkv+a++e++++++ ++  ++wtiD
     fh18168   379    STFVFEEIGRRLKDIG--PEVVKKVNAVFEWHITKG-GNIGAKWTID 422  

                   lknGkgvvygggaknkaDvtftisdedFlklltgklgPqtafmqGKLKik
                   lk+G+g vy+g+ak+ aD+t+++sdedF++++ gkl+Pq           
     fh18168   423 LKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQ----------- 461  

                   GnimlAmklmavlkkfl<-*
                          k  ++++ ++   
     fh18168   462 -------KPINTVDYMD    471  

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