hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-08475179/chunk_1/iprscan-20090618-08475179.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh18433 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 503.7 2e-148 1 PF07714.7.fs Protein tyrosine kinase 501.8 7.2e-148 1 PF01404.9.ls Ephrin receptor ligand binding domain 476.5 3e-140 1 PF01404.9.fs Ephrin receptor ligand binding domain 474.5 1.2e-139 1 PF00069.15.ls Protein kinase domain 169.5 7.7e-48 1 PF00069.15.fs Protein kinase domain 167.7 1.6e-47 1 PF00041.11.ls Fibronectin type III domain 121.2 2.7e-33 2 PF00041.11.fs Fibronectin type III domain 117.2 5.1e-33 2 PF00536.20.fs SAM domain (Sterile alpha motif) 50.2 3.8e-14 1 PF07647.7.fs SAM domain (Sterile alpha motif) 36.1 6.2e-10 1 PF09132.1.fs BmKX 15.8 1.5e-05 1 PF00536.20.ls SAM domain (Sterile alpha motif) 12.0 0.013 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01404.9.fs 1/1 73 246 .. 1 177 [] 474.5 1.2e-139 PF01404.9.ls 1/1 73 246 .. 1 177 [] 476.5 3e-140 PF09132.1.fs 1/1 303 319 .. 14 30 .] 15.8 1.5e-05 PF00041.11.fs 1/2 371 464 .. 1 84 [] 49.7 1.2e-13 PF00041.11.ls 1/2 371 464 .. 1 84 [] 51.7 2.3e-12 PF00041.11.ls 2/2 482 565 .. 1 84 [] 69.5 9.8e-18 PF00041.11.fs 2/2 482 565 .. 1 84 [] 67.5 9.5e-19 PF00069.15.fs 1/1 689 946 .. 1 287 [] 167.7 1.6e-47 PF07714.7.ls 1/1 689 946 .. 1 272 [] 503.7 2e-148 PF00069.15.ls 1/1 689 946 .. 1 287 [] 169.5 7.7e-48 PF07714.7.fs 1/1 689 946 .. 1 272 [] 501.8 7.2e-148 PF07647.7.fs 1/1 976 1017 .] 1 44 [. 36.1 6.2e-10 PF00536.20.fs 1/1 977 1017 .] 1 41 [. 50.2 3.8e-14 PF00536.20.ls 1/1 977 1017 .] 1 65 [] 12.0 0.013 Alignments of top-scoring domains: PF01404.9.fs: domain 1 of 1, from 73 to 246: score 474.5, E = 1.2e-139 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme Ev+LLD++t++g+LGW+++P++GWeE+ ++DEn+ pI+TYQVC+Vme fh18433 73 EVNLLDSRTVMGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVME 119 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy +nQnNWL T+wI+++gA+R+++eLkFT+RDCnSlPg+lGtCKETFN+YY+ fh18433 120 QNQNNWLLTSWISNEGASRIFIELKFTLRDCNSLPGGLGTCKETFNMYYF 169 ESDedvgtalpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsvG ESD+ +g ++++enqyiK+DTIAADESFt++Dlgdrv+KLNtEvR+vG fh18433 170 ESDDQNG---RNIKENQYIKIDTIAADESFTELDLGDRVMKLNTEVRDVG 216 PLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* PLsKkGFYLAFQDvGACiALvSVRV+YKKC fh18433 217 PLSKKGFYLAFQDVGACIALVSVRVYYKKC 246 PF01404.9.ls: domain 1 of 1, from 73 to 246: score 476.5, E = 3e-140 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme Ev+LLD++t++g+LGW+++P++GWeE+ ++DEn+ pI+TYQVC+Vme fh18433 73 EVNLLDSRTVMGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVME 119 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy +nQnNWL T+wI+++gA+R+++eLkFT+RDCnSlPg+lGtCKETFN+YY+ fh18433 120 QNQNNWLLTSWISNEGASRIFIELKFTLRDCNSLPGGLGTCKETFNMYYF 169 ESDedvgtalpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsvG ESD+ +g ++++enqyiK+DTIAADESFt++Dlgdrv+KLNtEvR+vG fh18433 170 ESDDQNG---RNIKENQYIKIDTIAADESFTELDLGDRVMKLNTEVRDVG 216 PLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* PLsKkGFYLAFQDvGACiALvSVRV+YKKC fh18433 217 PLSKKGFYLAFQDVGACIALVSVRVYYKKC 246 PF09132.1.fs: domain 1 of 1, from 303 to 319: score 15.8, E = 1.5e-05 *->MCtlGiSdKaGyCtaCT<-* MC +G K+G+C+ C fh18433 303 MCKAGYEEKNGTCQVCR 319 PF00041.11.fs: domain 1 of 2, from 371 to 464: score 49.7, E = 1.2e-13 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+n +++v++ts+ l+W pP ++g+++ +Y + + +++n+ fh18433 371 PSAPRNA-ISNVNETSVFLEWIPPAdtGGRKDVSYYIAC-KKCNSHA 415 ............wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpe + ++ +++ + +++ ++t s++ +L ++t+Yt+ + Avng+ + fh18433 416 gvceecgghvryLPRQSGLKNT-SVMMVDLLAHTNYTFEIEAVNGV-SDL 463 S<-* S fh18433 464 S 464 PF00041.11.ls: domain 1 of 2, from 371 to 464: score 51.7, E = 2.3e-12 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+n +++v++ts+ l+W pP ++g+++ +Y + + +++n+ fh18433 371 PSAPRNA-ISNVNETSVFLEWIPPAdtGGRKDVSYYIAC-KKCNSHA 415 ............wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpe + ++ +++ + +++ ++t s++ +L ++t+Yt+ + Avng+ + fh18433 416 gvceecgghvryLPRQSGLKNT-SVMMVDLLAHTNYTFEIEAVNGV-SDL 463 S<-* S fh18433 464 S 464 PF00041.11.ls: domain 2 of 2, from 482 to 565: score 69.5, E = 9.8e-18 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Ps++tn++ + +s++lsW+ P+++ng i Ye++y +k+ + fh18433 482 PSPVTNVKKGKIAKNSISLSWQEPDrPNGIILEYEIKY-FEKDQETS 527 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ ++ t + t +gLkP + Y+++++A++++G G +S fh18433 528 YTIIKSKET-TITAEGLKPASVYVFQIRARTAAGyGVFS 565 PF00041.11.fs: domain 2 of 2, from 482 to 565: score 67.5, E = 9.5e-19 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Ps++tn++ + +s++lsW+ P+++ng i Ye++y +k+ + fh18433 482 PSPVTNVKKGKIAKNSISLSWQEPDrPNGIILEYEIKY-FEKDQETS 527 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ ++ t + t +gLkP + Y+++++A++++G G +S fh18433 528 YTIIKSKET-TITAEGLKPASVYVFQIRARTAAGyGVFS 565 PF00069.15.fs: domain 1 of 1, from 689 to 946: score 167.7, E = 1.6e-47 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +++++++G+G fG+V+ ++ k gk++ VA+K++k+ +++ +++ fh18433 689 ITIERVIGAGEFGEVCSGRLKLPGKrelPVAIKTLKVGYTEK--QRR 733 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy +++ E++i+ ++HpNI+ l +v++ ++ + +V+Ey+e+G +L ++ fh18433 734 DFLG-EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENG----SLDTF 778 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ +++g + + ++ +++ i g++YL ++g +HRDL NIL+++ fh18433 779 LK--KNDGQF--TVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINS 824 ngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngy n v+ K++DFGl+++l+++ + ++ + +++ APE + ++ fh18433 825 NLVC----KVSDFGLSRVLEddPeAAYtTRGGKIPIRWTAPEAIA-FRKF 869 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd ++++DvWS+G++++e+++ G+ P+++ ++ d ++ +++ + p + d fh18433 870 TSASDVWSYGIVMWEVVSyGERPYWEM---TnQDVIKAVEEGYRLPSPMD 916 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +p ++ +L+ +c++k ++R+ ++ei++ + fh18433 917 CP-----------------AALYQLMLDCWQKERNSRPKFDEIVNM--L 946 -* fh18433 - - PF07714.7.ls: domain 1 of 1, from 689 to 946: score 503.7, E = 2e-148 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +++ +++G+G+FGeV+ G+lk ++++ e++VA+KtLk g++e++ fh18433 689 ITIERVIGAGEFGEVCSGRLK-LPGKRELPVAIKTLKV-GYTEKQ-- 731 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl EAsiM ++ dHpNi+ L Gv+tk ++P ++iVtEyme+G+L fh18433 732 RRDFLGEASIMGQF-DHPNIIHLEGVVTK-SKP----VMIVTEYMENGSL 775 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fL+k+ ++++t+ +L+++ + i++GM YL+++++vHRDLAARN+L++ fh18433 776 DTFLKKN--DGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILIN 823 enlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFtsk +nlv+K+sDFGL+R + +dd +++ ggk+P++W+APE+++++kFts+ fh18433 824 SNLVCKVSDFGLSRVL-EDDPEaAYTTRGGKIPIRWTAPEAIAFRKFTSA 872 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde SDVWS+G+++WE++++Ge P Y++m+n++v++ + e+GyRLp P++CP+ fh18433 873 SDVWSYGIVMWEVVSYGERP-YWEMTNQDVIKAV-EEGYRLPSPMDCPAA 920 lYdlMlqCWaedPedRPtFselveeL<-* lY+lMl+CW+++ + RP F e+v+ L fh18433 921 LYQLMLDCWQKERNSRPKFDEIVNML 946 PF00069.15.ls: domain 1 of 1, from 689 to 946: score 169.5, E = 7.7e-48 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +++++++G+G fG+V+ ++ k gk++ VA+K++k+ +++ +++ fh18433 689 ITIERVIGAGEFGEVCSGRLKLPGKrelPVAIKTLKVGYTEK--QRR 733 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy +++ E++i+ ++HpNI+ l +v++ ++ + +V+Ey+e+G +L ++ fh18433 734 DFLG-EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENG----SLDTF 778 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ +++g + + ++ +++ i g++YL ++g +HRDL NIL+++ fh18433 779 LK--KNDGQF--TVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINS 824 ngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngy n v+ K++DFGl+++l+++ + ++ + +++ APE + ++ fh18433 825 NLVC----KVSDFGLSRVLEddPeAAYtTRGGKIPIRWTAPEAIA-FRKF 869 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd ++++DvWS+G++++e+++ G+ P+++ ++ d ++ +++ + p + d fh18433 870 TSASDVWSYGIVMWEVVSyGERPYWEM---TnQDVIKAVEEGYRLPSPMD 916 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +p ++ +L+ +c++k ++R+ ++ei++ + fh18433 917 CP-----------------AALYQLMLDCWQKERNSRPKFDEIVNM--L 946 -* fh18433 - - PF07714.7.fs: domain 1 of 1, from 689 to 946: score 501.8, E = 7.2e-148 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +++ +++G+G+FGeV+ G+lk ++++ e++VA+KtLk g++e++ fh18433 689 ITIERVIGAGEFGEVCSGRLK-LPGKRELPVAIKTLKV-GYTEKQ-- 731 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl EAsiM ++ dHpNi+ L Gv+tk ++P ++iVtEyme+G+L fh18433 732 RRDFLGEASIMGQF-DHPNIIHLEGVVTK-SKP----VMIVTEYMENGSL 775 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fL+k+ ++++t+ +L+++ + i++GM YL+++++vHRDLAARN+L++ fh18433 776 DTFLKKN--DGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILIN 823 enlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFtsk +nlv+K+sDFGL+R + +dd +++ ggk+P++W+APE+++++kFts+ fh18433 824 SNLVCKVSDFGLSRVL-EDDPEaAYTTRGGKIPIRWTAPEAIAFRKFTSA 872 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde SDVWS+G+++WE++++Ge P Y++m+n++v++ + e+GyRLp P++CP+ fh18433 873 SDVWSYGIVMWEVVSYGERP-YWEMTNQDVIKAV-EEGYRLPSPMDCPAA 920 lYdlMlqCWaedPedRPtFselveeL<-* lY+lMl+CW+++ + RP F e+v+ L fh18433 921 LYQLMLDCWQKERNSRPKFDEIVNML 946 PF07647.7.fs: domain 1 of 1, from 976 to 1017: score 36.1, E = 6.2e-10 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrltee<-* s + sv+eWLe+i++ g+Y+++F+++g+++++++ +++t+e fh18433 976 LGSGAYRSVGEWLEAIKM-GRYTEIFMENGYSSMDAV-AQVTLE 1017 PF00536.20.fs: domain 1 of 1, from 977 to 1017: score 50.2, E = 3.8e-14 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqltee<-* + ++sVgeWLe+i++g+Y++ F+++gy+++d+++q t e fh18433 977 GSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVTLE 1017 PF00536.20.ls: domain 1 of 1, from 977 to 1017: score 12.0, E = 0.013 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + ++sVgeWLe+i++g+Y++ F+++gy+++d+++q fh18433 977 GSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQ---------- 1013 vtllGHrkKIlssIqgLk<-* vtl fh18433 1014 VTL--------------E 1017 //