hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08475179/chunk_1/iprscan-20090618-08475179.nocrc
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Query sequence: fh18433
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 471.3   4.5e-137   1
SM00615                                                 423.1   1.5e-122   1
SM00220                                                 178.2    7.7e-49   1
SM00060                                                  95.2      8e-24   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00615    1/1      73   246 ..     1   184 []   423.1 1.5e-122
SM00060    1/2     371   461 ..     1    69 []    38.1  1.2e-06
SM00060    2/2     482   562 ..     1    69 []    57.0  2.4e-12
SM00220    1/1     689   950 ..     1   231 []   178.2  7.7e-49
SM00219    1/1     689   946 ..     1   280 []   471.3 4.5e-137

Alignments of top-scoring domains:
SM00615: domain 1 of 1, from 73 to 246: score 423.1, E = 1.5e-122
                   *->EVvLLDtktetgeLgWttyPpsggtWeEvsglDeknnpiRtYqvCnV
                      EV+LLD++t++g+LgW+++P++g  WeE++++De+++pi+tYqvC V
     fh18433    73    EVNLLDSRTVMGDLGWIAFPKNG--WEEIGEVDENYAPIHTYQVCKV 117  

                   meinesnQNNWLrTnfIeRrgAsRiYVELkFTvRDCnSlpgvaglsCKET
                   me   +nQNNWL+T +I+ +gAsRi++ELkFT+RDCnSlpg++g +CKET
     fh18433   118 ME---QNQNNWLLTSWISNEGASRIFIELKFTLRDCNSLPGGLG-TCKET 163  

                   FNLYYyEsDsdtatastpfwmenpyiKvDTiAADesftqvdlGdrvvklN
                   FN+YY EsD++++   ++++ en+yiK+DTiAADesft+ dlGdrv+klN
     fh18433   164 FNMYYFESDDQNG---RNIK-ENQYIKIDTIAADESFTELDLGDRVMKLN 209  

                   tevrsvGplskkGfYLAFQdqGACvaLlsVrVFYkkC<-*
                   tevr+vGplskkGfYLAFQd+GAC+aL+sVrV+YkkC   
     fh18433   210 TEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKC    246  

SM00060: domain 1 of 2, from 371 to 461: score 38.1, E = 1.2e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P++P+n     +++v++t      sv l+W pP + ++ +++ +Y+ 
     fh18433   371    PSAPRN----AISNVNET------SVFLEWIPPadtggrkdVSYYIa 407  

                   ...............................ytltgLkPgaepwteYefr
                    ++ ++  ++ ++ ++ ++  +++++ +++++   +L ++    t+Y+f 
     fh18433   408 ckkcnshagvceecgghvrylprqsglkntsVMMVDLLAH----TNYTFE 453  

                   VrAvngndaGeg<-*
                   + Av    +G +   
     fh18433   454 IEAV----NGVS    461  

SM00060: domain 2 of 2, from 482 to 562: score 57.0, E = 2.4e-12
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+p++n   ++   + ++      s++lsW++P+ +++ i++Y+ + 
     fh18433   482    PSPVTN---VKKGKIAKN------SISLSWQEPdrpngiILEYEiky 519  

                   ..................ytltgLkPgaepwteYefrVrAvngndaGeg<
                    +++++++ +  ++++++ t +gLkP     + Y+f++rA+++  aG+g 
     fh18433   520 fekdqetsytiikskettITAEGLKPA----SVYVFQIRARTA--AGYG  562  

                   -*
                     
     fh18433     -    -    

SM00220: domain 1 of 1, from 689 to 950: score 178.2, E = 7.7e-49
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                       ++ +++G G FG+V+ +r k +++    vAiK +k + ++++++++
     fh18433   689    ITIERVIGAGEFGEVCSGRLKLpgkRELPVAIKTLKvgytekqrRDF 735  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   l E +i+ + dHPNI++L +v   ++ + +V+Ey+e+  G+L ++lkk+ 
     fh18433   736 LGEASIMGQfDHPNIIHLEGVVTKsKPVMIVTEYMEN--GSLDTFLKKND 783  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   ++     ++  +   ++r i  +++YL ++g +HRDL   NiL++s+ + 
     fh18433   784 GQ-----FTViQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSnlVC 828  

                   KlaDFGlArql..........ttfvGTpeYmAPEvl...gYgkpavDiWS
                   K++DFGl+r+l+++++   +++       + APE +  ++++  a+D+WS
     fh18433   829 KVSDFGLSRVLeddpeaayttRGGKIPIRWTAPEAIafrKFTS-ASDVWS 877  

                   lGcilyEllt.GkpPFp..qldlifkkig...........SpeakdLikk
                    G++++E ++ G+ P+++ + + ++k + ++++ +++ + +  + +L+  
     fh18433   878 YGIVMWEVVSyGERPYWemTNQDVIKAVEegyrlpspmdcPAALYQLMLD 927  

                   lLvkdPekRlta.eaLedeldikaHPff<-*
                   +++k+ + R+  +e+ +     +++  +   
     fh18433   928 CWQKERNSRPKFdEIVN-----MLDKLI    950  

SM00219: domain 1 of 1, from 689 to 946: score 471.3, E = 4.5e-137
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      +t ++++G G+FGeV+ G+lk +++++++VA+KtLk + +++++++F
     fh18433   689    ITIERVIGAGEFGEVCSGRLKlpgkreLPVAIKTLKVGYtekqRRDF 735  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l Ea+iM ++  +HpNi+ L Gv+t++       +P+miv+Eyme+G+L+
     fh18433   736 LGEASIMGQF--DHPNIIHLEGVVTKS-------KPVMIVTEYMENGSLD 776  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                    +L+kn +++++ +L+ +   I++GM YL+++++vHRDLAARN+L+++n+
     fh18433   777 TFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNL 826  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   v+K+sDFGLsR l+dd      +  Y+++   ggk  +PirW+APE++ +
     fh18433   827 VCKVSDFGLSRVLEDD-----PEAAYTTR---GGK--IPIRWTAPEAIAF 866  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   +kFts+SDVWS+G+++WE+ ++Ge PY++     m+n++v++ +++GyRl
     fh18433   867 RKFTSASDVWSYGIVMWEVVSYGERPYWE-----MTNQDVIKAVEEGYRL 911  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p P +        CP++lY+lMl+CW+ + ++RP F e+v  l   
     fh18433   912 PSPMD--------CPAALYQLMLDCWQKERNSRPKFDEIVNML    946  

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