hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-22144863/chunk_1/iprscan-20080809-22144863.nocrc
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Query sequence: fh18602
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00907.13.fs T-box                                          469.2   1.5e-147   1
PF00907.13.ls T-box                                          471.1   1.2e-138   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00907.13.fs   1/1      43   225 ..     1   193 []   469.2 1.5e-147
PF00907.13.ls   1/1      43   225 ..     1   193 []   471.1 1.2e-138

Alignments of top-scoring domains:
PF00907.13.fs: domain 1 of 1, from 43 to 225: score 469.2, E = 1.5e-147
                   *->qvsLedreLWkkFhelgTEMIITKsGRRMFPtlkvsvsGLdPnakYs
                      +v+Le +eLW++Fh+lgTEM+ITKsGRRMFP +kv+vsGLd +akY+
     fh18602    43    KVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYI 89   

                   vlLDfvPvDdkRYKYafnngeWvvaGKAEphlpsRvYiHPDSPatGahWM
                   +l+D+v++Dd RYK  f+n++W+vaGKA+p++p+R+YiHPDSPatG++WM
     fh18602    90 LLMDIVAADDCRYK--FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWM 137  

                   kqpVSFdKvKLTNntglEDgnGhmIiLnSMHKYqPRlHIVrvddesplsv
                    +pV F+K+KLTNn+ + D++G   iLnSMHKYqPR+HIVr++d+ +l++
     fh18602   138 AKPVAFHKLKLTNNI-S-DKHGF-TILNSMHKYQPRFHIVRANDILKLPY 184  

                   pqpsqsrvqTfsFPETqFIAVTAYQNeeITkLKIdnNPFAKGFRDa<-*
                        s+++T++FPET FIAVTAYQN++IT+LKIdnNPFAKGFRD    
     fh18602   185 -----STFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDT    225  

PF00907.13.ls: domain 1 of 1, from 43 to 225: score 471.1, E = 1.2e-138
                   *->qvsLedreLWkkFhelgTEMIITKsGRRMFPtlkvsvsGLdPnakYs
                      +v+Le +eLW++Fh+lgTEM+ITKsGRRMFP +kv+vsGLd +akY+
     fh18602    43    KVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYI 89   

                   vlLDfvPvDdkRYKYafnngeWvvaGKAEphlpsRvYiHPDSPatGahWM
                   +l+D+v++Dd RYK  f+n++W+vaGKA+p++p+R+YiHPDSPatG++WM
     fh18602    90 LLMDIVAADDCRYK--FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWM 137  

                   kqpVSFdKvKLTNntglEDgnGhmIiLnSMHKYqPRlHIVrvddesplsv
                    +pV F+K+KLTNn+ + D++G   iLnSMHKYqPR+HIVr++d+ +l++
     fh18602   138 AKPVAFHKLKLTNNI-S-DKHGF-TILNSMHKYQPRFHIVRANDILKLPY 184  

                   pqpsqsrvqTfsFPETqFIAVTAYQNeeITkLKIdnNPFAKGFRDa<-*
                        s+++T++FPET FIAVTAYQN++IT+LKIdnNPFAKGFRD    
     fh18602   185 -----STFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDT    225  

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