hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-22273158/chunk_1/iprscan-20080809-22273158.nocrc
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Query sequence: fh18774
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             33.6    6.2e-07   3
PF00560.23.fs Leucine Rich Repeat                             28.2    1.2e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   1/3      26    44 ..     1    24 []    16.2   0.0022
PF00560.23.ls   1/3      26    44 ..     1    24 []    17.9    0.033
PF00560.23.ls   3/3      70    91 ..     1    24 []     8.5      6.7

Alignments of top-scoring domains:
PF00560.23.fs: domain 1 of 3, from 26 to 44: score 16.2, E = 0.0022
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      +L+eLdLs+ N +l+ +lp+  nl   
     fh18774    26    QLQELDLSN-N-HLE-TLPD--NL    44   

PF00560.23.ls: domain 1 of 3, from 26 to 44: score 17.9, E = 0.033
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      +L+eLdLs+ N +l+ +lp+  nl   
     fh18774    26    QLQELDLSN-N-HLE-TLPD--NL    44   

PF00560.23.ls: domain 3 of 3, from 70 to 91: score 8.5, E = 6.7
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +LeeL+L+g N ++  ++ ++l++    
     fh18774    70    KLEELSLEG-N-PFL-TVNDNLkVS    91   

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