# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh19105.fasta.nr -Q fh19105.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh19105, 108 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824704 sequences Expectation_n fit: rho(ln(x))= 4.4987+/-0.000182; mu= 9.0284+/- 0.010 mean_var=59.6419+/-11.839, 0's: 44 Z-trim: 45 B-trim: 2853 in 1/64 Lambda= 0.166073 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088340|dbj|BAD92617.1| CD81 antigen variant [ ( 108) 766 190.7 3.2e-47 gi|148686246|gb|EDL18193.1| CD 81 antigen, isoform ( 165) 198 54.7 4.1e-06 gi|8574076|emb|CAB94774.1| Tapa-1 protein [Mus mus ( 236) 198 54.9 5.3e-06 gi|74201839|dbj|BAE22950.1| unnamed protein produc ( 236) 198 54.9 5.3e-06 gi|549047|sp|P35762|CD81_MOUSE CD81 antigen (26 kD ( 236) 198 54.9 5.3e-06 gi|147886444|gb|ABQ52430.1| CD81 antigen [Tupaia c ( 236) 193 53.7 1.2e-05 gi|38503376|sp|P60033|CD81_HUMAN CD81 antigen (26 ( 236) 193 53.7 1.2e-05 gi|33286240|gb|AAQ01667.1| CD81 antigen [Tupaia be ( 236) 193 53.7 1.2e-05 gi|54695882|gb|AAV38313.1| CD81 antigen (target of ( 237) 193 53.7 1.2e-05 gi|73983533|ref|XP_854381.1| PREDICTED: similar to ( 244) 193 53.7 1.3e-05 gi|149061760|gb|EDM12183.1| rCG47614, isoform CRA_ ( 165) 191 53.0 1.3e-05 gi|194135611|gb|ACF33485.1| CD 81 antigen [Peromys ( 94) 187 51.9 1.7e-05 gi|38014843|gb|AAH60583.1| Cd81 protein [Rattus no ( 236) 191 53.2 1.7e-05 gi|11131474|sp|Q62745|CD81_RAT CD81 antigen (26 kD ( 236) 191 53.2 1.7e-05 gi|126346239|ref|XP_001375361.1| PREDICTED: simila ( 83) 186 51.6 1.8e-05 gi|11141541|gb|AAG31990.1| CD81 [Saguinus oedipus] ( 211) 187 52.2 3e-05 gi|23396520|sp|Q9N0J9|CD81_SAGOE CD81 protein ( 236) 187 52.2 3.3e-05 gi|11131665|sp|O97703|CD81_CERAE CD81 antigen ( 236) 186 52.0 3.9e-05 gi|149758889|ref|XP_001492773.1| PREDICTED: simila ( 324) 184 51.6 6.9e-05 gi|115522021|gb|ABJ09400.1| CD81 antigen [Sus scro ( 236) 182 51.0 7.6e-05 gi|156622226|emb|CAL37099.1| CD81 protein [Sus scr ( 236) 182 51.0 7.6e-05 gi|122140914|sp|Q3ZCD0|CD81_BOVIN CD81 antigen ( 236) 178 50.1 0.00015 gi|186886442|gb|ACC93597.1| CD81 antigen [Ovis ari ( 236) 178 50.1 0.00015 gi|60098981|emb|CAH65321.1| hypothetical protein [ ( 166) 175 49.2 0.00019 gi|171198354|gb|ACB45431.1| CD81 antigen [Capra hi ( 236) 175 49.3 0.00024 gi|50414991|gb|AAH77897.1| Cd81-prov protein [Xeno ( 237) 169 47.9 0.00066 gi|27735382|gb|AAH41217.1| Cd81-prov protein [Xeno ( 236) 168 47.7 0.00078 gi|39795776|gb|AAH64182.1| CD81 protein [Xenopus t ( 237) 166 47.2 0.0011 >>gi|62088340|dbj|BAD92617.1| CD81 antigen variant [Homo (108 aa) initn: 766 init1: 766 opt: 766 Z-score: 1002.9 bits: 190.7 E(): 3.2e-47 Smith-Waterman score: 766; 100.000% identity (100.000% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 fh1910 QAGRGRAAAPACSEVGRGWGAVPRIPLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QAGRGRAAAPACSEVGRGWGAVPRIPLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQE 10 20 30 40 50 60 70 80 90 100 fh1910 DCHQKIDDLFSGKLYLIGIAAIVVAVIMVSGRGRRACSLGCPFRGALC :::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DCHQKIDDLFSGKLYLIGIAAIVVAVIMVSGRGRRACSLGCPFRGALC 70 80 90 100 >>gi|148686246|gb|EDL18193.1| CD 81 antigen, isoform CRA (165 aa) initn: 192 init1: 192 opt: 198 Z-score: 264.9 bits: 54.7 E(): 4.1e-06 Smith-Waterman score: 198; 88.235% identity (97.059% similar) in 34 aa overlap (56-89:113-146) 30 40 50 60 70 80 fh1910 PLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVA : ::.:::::::.::::::::::::::::: gi|148 LNCCGSNALTTLTTTILRNSLCPSGGNILTPLLQQDCHQKIDELFSGKLYLIGIAAIVVA 90 100 110 120 130 140 90 100 fh1910 VIMVSGRGRRACSLGCPFRGALC :::. gi|148 VIMIFEMILSMVLCCGIRNSSVY 150 160 >>gi|8574076|emb|CAB94774.1| Tapa-1 protein [Mus musculu (236 aa) initn: 192 init1: 192 opt: 198 Z-score: 262.9 bits: 54.9 E(): 5.3e-06 Smith-Waterman score: 198; 88.235% identity (97.059% similar) in 34 aa overlap (56-89:184-217) 30 40 50 60 70 80 fh1910 PLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVA : ::.:::::::.::::::::::::::::: gi|857 LNCCGSNALTTLTTTILRNSLCPSGGNILTPLLQQDCHQKIDELFSGKLYLIGIAAIVVA 160 170 180 190 200 210 90 100 fh1910 VIMVSGRGRRACSLGCPFRGALC :::. gi|857 VIMIFEMILSMVLCCGIRNSSVY 220 230 >>gi|74201839|dbj|BAE22950.1| unnamed protein product [M (236 aa) initn: 192 init1: 192 opt: 198 Z-score: 262.9 bits: 54.9 E(): 5.3e-06 Smith-Waterman score: 198; 88.235% identity (97.059% similar) in 34 aa overlap (56-89:184-217) 30 40 50 60 70 80 fh1910 PLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVA : ::.:::::::.::::::::::::::::: gi|742 LNCCGSNALTTLTTTILRNSLCPSGGNILTPLLQQDCHQKIDELFSGKLYLIGIAAIVVA 160 170 180 190 200 210 90 100 fh1910 VIMVSGRGRRACSLGCPFRGALC :::. gi|742 VIMIFEMILSMVLCCGIRNSSVY 220 230 >>gi|549047|sp|P35762|CD81_MOUSE CD81 antigen (26 kDa ce (236 aa) initn: 192 init1: 192 opt: 198 Z-score: 262.9 bits: 54.9 E(): 5.3e-06 Smith-Waterman score: 198; 88.235% identity (97.059% similar) in 34 aa overlap (56-89:184-217) 30 40 50 60 70 80 fh1910 PLYAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVA : ::.:::::::.::::::::::::::::: gi|549 LNCCGSNALTTLTTTILRNTLCPSGGNILTPLLQQDCHQKIDELFSGKLYLIGIAAIVVA 160 170 180 190 200 210 90 100 fh1910 VIMVSGRGRRACSLGCPFRGALC :::. gi|549 VIMIFEMILSMVLCCGIRNSSVY 220 230 >>gi|147886444|gb|ABQ52430.1| CD81 antigen [Tupaia chine (236 aa) initn: 190 init1: 190 opt: 193 Z-score: 256.4 bits: 53.7 E(): 1.2e-05 Smith-Waterman score: 193; 90.625% identity (100.000% similar) in 32 aa overlap (58-89:186-217) 30 40 50 60 70 80 fh1910 YAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVAVI ..:::::::::::::::::::::::::::: gi|147 CCGSGTLFTLTTSVLKNNLCPSGSNVISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVI 160 170 180 190 200 210 90 100 fh1910 MVSGRGRRACSLGCPFRGALC :. gi|147 MIFEMILSMVLCCGTRNSSVY 220 230 >>gi|38503376|sp|P60033|CD81_HUMAN CD81 antigen (26 kDa (236 aa) initn: 190 init1: 190 opt: 193 Z-score: 256.4 bits: 53.7 E(): 1.2e-05 Smith-Waterman score: 193; 90.625% identity (100.000% similar) in 32 aa overlap (58-89:186-217) 30 40 50 60 70 80 fh1910 YAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVAVI ..:::::::::::::::::::::::::::: gi|385 CCGSSTLTALTTSVLKNNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVI 160 170 180 190 200 210 90 100 fh1910 MVSGRGRRACSLGCPFRGALC :. gi|385 MIFEMILSMVLCCGIRNSSVY 220 230 >>gi|33286240|gb|AAQ01667.1| CD81 antigen [Tupaia belang (236 aa) initn: 190 init1: 190 opt: 193 Z-score: 256.4 bits: 53.7 E(): 1.2e-05 Smith-Waterman score: 193; 90.625% identity (100.000% similar) in 32 aa overlap (58-89:186-217) 30 40 50 60 70 80 fh1910 YAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVAVI ..:::::::::::::::::::::::::::: gi|332 CCGSGTLFTLTTSVLKNNLCPSGSNVISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVI 160 170 180 190 200 210 90 100 fh1910 MVSGRGRRACSLGCPFRGALC :. gi|332 MIFEMILSMVLCCGIRNSSVY 220 230 >>gi|54695882|gb|AAV38313.1| CD81 antigen (target of ant (237 aa) initn: 190 init1: 190 opt: 193 Z-score: 256.4 bits: 53.7 E(): 1.2e-05 Smith-Waterman score: 193; 90.625% identity (100.000% similar) in 32 aa overlap (58-89:186-217) 30 40 50 60 70 80 fh1910 YAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVAVI ..:::::::::::::::::::::::::::: gi|546 CCGSSTLTALTTSVLKNNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVI 160 170 180 190 200 210 90 100 fh1910 MVSGRGRRACSLGCPFRGALC :. gi|546 MIFEMILSMVLCCGIRNSSVYL 220 230 >>gi|73983533|ref|XP_854381.1| PREDICTED: similar to CD8 (244 aa) initn: 190 init1: 190 opt: 193 Z-score: 256.2 bits: 53.7 E(): 1.3e-05 Smith-Waterman score: 193; 90.625% identity (100.000% similar) in 32 aa overlap (58-89:194-225) 30 40 50 60 70 80 fh1910 YAFCGDHGLLRDNGKPGAEARSLTTRAWPPLQEDCHQKIDDLFSGKLYLIGIAAIVVAVI ..:::::::::::::::::::::::::::: gi|739 CCGSSTLSALTTSMLKNSLCPSGSNVISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVI 170 180 190 200 210 220 90 100 fh1910 MVSGRGRRACSLGCPFRGALC :. gi|739 MIFEMILSMVLCCGIRNSSVY 230 240 108 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 22:37:35 2008 done: Sat Aug 9 22:40:43 2008 Total Scan time: 508.070 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]