hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-22472638/chunk_1/iprscan-20080809-22472638.nocrc
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Query sequence: fh19134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08662.1.fs Eukaryotic translation initiation factor eIF   195.1    1.6e-55   1
PF08662.1.ls Eukaryotic translation initiation factor eIF    81.1    3.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08662.1.fs   1/1      47   169 ..     1   125 [.   195.1  1.6e-55
PF08662.1.ls   1/1      47   170 .]     1   203 []    81.1  3.2e-21

Alignments of top-scoring domains:
PF08662.1.fs: domain 1 of 1, from 47 to 169: score 195.1, E = 1.6e-55
                   *->KsFFkaDkvqlkWNkkGtyLLvlasTdvDKtgkSYYGetnLYlistt
                      +++F++ +++l+W+k+G+yL+v+++ +++K+++   +++++++++++
     fh19134    47    RNLFNVVDCKLHWQKNGDYLCVKVD-RTPKGTQGVVTNFEIFRMREK 92   

                   ggfdevveLdkeGPIhDvaWSpnskeFaVvyGymPapkitlFdlkr.gkg
                   +++++vve++++  I+++aW+pn+++FaV++G+ P++ ++++++k++gk+
     fh19134    93 QVPVDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNnGKI 140  

                   nvihslgeqprNTifwsPfGrlvllAGFG<-*
                   ++i ++++q++NTifwsP+G++v+lAG++   
     fh19134   141 ELIKMFDKQQANTIFWSPQGQFVVLAGLR    169  

PF08662.1.ls: domain 1 of 1, from 47 to 170: score 81.1, E = 3.2e-21
                   *->KsFFkaDkvqlkWNkkGtyLLvlasTdvDKtgkSYYGetnLYlistt
                      +++F++ +++l+W+k+G+yL+v+++ +++K+++   +++++++++++
     fh19134    47    RNLFNVVDCKLHWQKNGDYLCVKVD-RTPKGTQGVVTNFEIFRMREK 92   

                   ggfdevveLdkeGPIhDvaWSpnskeFaVvyGymPapkitlFdlkr.gkg
                   +++++vve++++  I+++aW+pn+++FaV++G+ P++ ++++++k++gk+
     fh19134    93 QVPVDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNnGKI 140  

                   nvihslgeqprNTifwsPfGrlvllAGFGNLaGqiefYwDvknnkkkiat
                   ++i ++++q++NTifwsP+G++v+lAG+            +         
     fh19134   141 ELIKMFDKQQANTIFWSPQGQFVVLAGL------------RR-------- 170  

                   feasnttvceWsPdGryflTATTsPRLRVDNGfKIWhysGkLlykkdfps
                                                                     
     fh19134     - -------------------------------------------------- -    

                   gdELyqv<-*
                             
     fh19134     - -------    -    

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