hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08544819/chunk_1/iprscan-20090618-08544819.nocrc
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Query sequence: fh19224
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02931.14.ls  Neurotransmitter-gated ion-channel lig   250.9    2.4e-72   1
PF02931.14.fs  Neurotransmitter-gated ion-channel lig   249.1    8.4e-72   1
PF02932.6.fs   Neurotransmitter-gated ion-channel tra   235.6    5.3e-71   1
PF02932.6.ls   Neurotransmitter-gated ion-channel tra   237.4    2.9e-68   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02931.14.fs    1/1      41   247 ..     1   246 []   249.1  8.4e-72
PF02931.14.ls    1/1      41   247 ..     1   246 []   250.9  2.4e-72
PF02932.6.fs     1/1     254   472 ..     1   289 []   235.6  5.3e-71
PF02932.6.ls     1/1     254   472 ..     1   289 []   237.4  2.9e-68

Alignments of top-scoring domains:
PF02931.14.fs: domain 1 of 1, from 41 to 247: score 249.1, E = 8.4e-72
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       ++ +d+Ll++    Yd r+RP  +g++ p v V++++ + +i+ V+
     fh19224    41    VKETVDKLLKG----YDIRLRPD-FGGP-P-VCVGMNIDIASIDMVS 80   

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E+n+d+t+ ++++q+W+D+rLa+          +g + +l+l+      +
     fh19224    81 EVNMDYTLTMYFQQYWRDKRLAY----------SGIPLNLTLDNR----V 116  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   ++++W+PD+++ N+++++ h+vt++n ++r++p   dGtVl+  +++ ++
     fh19224   117 ADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP---DGTVLYGLRITTTA 163  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtp.vvekeeidLs
                   +C +d++ +P+D+QnC+l+++S++Y+++++ ++w+ +++ v   e i+L+
     fh19224   164 ACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKaVTGVERIELP 213  

                   dFtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp
                   +F + +   ++      +  ++g +++l+             ++ l+R++
     fh19224   214 QFSIVEHRLVSR----NVVFATGAYPRLS------------LSFRLKRNI 247  

                   <-*
                      
     fh19224     -     -    

PF02931.14.ls: domain 1 of 1, from 41 to 247: score 250.9, E = 2.4e-72
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       ++ +d+Ll++    Yd r+RP  +g++ p v V++++ + +i+ V+
     fh19224    41    VKETVDKLLKG----YDIRLRPD-FGGP-P-VCVGMNIDIASIDMVS 80   

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E+n+d+t+ ++++q+W+D+rLa+          +g + +l+l+      +
     fh19224    81 EVNMDYTLTMYFQQYWRDKRLAY----------SGIPLNLTLDNR----V 116  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   ++++W+PD+++ N+++++ h+vt++n ++r++p   dGtVl+  +++ ++
     fh19224   117 ADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP---DGTVLYGLRITTTA 163  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtp.vvekeeidLs
                   +C +d++ +P+D+QnC+l+++S++Y+++++ ++w+ +++ v   e i+L+
     fh19224   164 ACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKaVTGVERIELP 213  

                   dFtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp
                   +F + +   ++      +  ++g +++l+             ++ l+R++
     fh19224   214 QFSIVEHRLVSR----NVVFATGAYPRLS------------LSFRLKRNI 247  

                   <-*
                      
     fh19224     -     -    

PF02932.6.fs: domain 1 of 1, from 254 to 472: score 235.6, E = 5.3e-71
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      +++P++LI++Lsw++F++++Da++++v+LgI+++Lt+T++ +++re+
     fh19224   254    TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRET 300  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv
                   lPk+++v++++++++ +++fv++a++eya+v++++++R+P++++k++++ 
     fh19224   301 LPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKT 350  

                   rklfLerklPrll.....fmkrpneslsepnskrpllrrpgssssgaslk
                    k+ +     r ++++++++ + n++l+  ++              +++ 
     fh19224   351 AKAKN----DRSKsesnrVDAHGNILLTSLEV-------------HNEMN 383  

                   aeeyslskprselmfekgspeleeylcaHlqgardgldssgtakggrgkt
                     ++ + ++r++                       ++d+sg         
     fh19224   384 EVSGGIGDTRNS---------------------AISFDNSG--------- 403  

                   hpCkcckskggpvgesggslsplslkrlspelkkaiegvs.rfIaehvgp
                                          +++r+++  +++ + + +  + +h   
     fh19224   404 -----------------------IQYRKQSMPREGHGRFLgDRSLPH--- 427  

                   kaavka.wlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<
                       k+++lr+++++ ++k+++++++++IDR+++++Fp++f+l++l+y+ 
     fh19224   428 ----KKtHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYW  472  

                   -*
                     
     fh19224     -    -    

PF02932.6.ls: domain 1 of 1, from 254 to 472: score 237.4, E = 2.9e-68
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      +++P++LI++Lsw++F++++Da++++v+LgI+++Lt+T++ +++re+
     fh19224   254    TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRET 300  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv
                   lPk+++v++++++++ +++fv++a++eya+v++++++R+P++++k++++ 
     fh19224   301 LPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKT 350  

                   rklfLerklPrll.....fmkrpneslsepnskrpllrrpgssssgaslk
                    k+ +     r ++++++++ + n++l+  ++              +++ 
     fh19224   351 AKAKN----DRSKsesnrVDAHGNILLTSLEV-------------HNEMN 383  

                   aeeyslskprselmfekgspeleeylcaHlqgardgldssgtakggrgkt
                     ++ + ++r++                       ++d+sg         
     fh19224   384 EVSGGIGDTRNS---------------------AISFDNSG--------- 403  

                   hpCkcckskggpvgesggslsplslkrlspelkkaiegvs.rfIaehvgp
                                          +++r+++  +++ + + +  + +h   
     fh19224   404 -----------------------IQYRKQSMPREGHGRFLgDRSLPH--- 427  

                   kaavka.wlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<
                       k+++lr+++++ ++k+++++++++IDR+++++Fp++f+l++l+y+ 
     fh19224   428 ----KKtHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYW  472  

                   -*
                     
     fh19224     -    -    

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