hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08544819/chunk_1/iprscan-20090618-08544819.nocrc
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Query sequence: fh19224
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00860 LIC: Cation transporter family protein         754.8   1.8e-224   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00860   1/1       5   475 ..     1   550 []   754.8 1.8e-224

Alignments of top-scoring domains:
TIGR00860: domain 1 of 1, from 5 to 475: score 754.8, E = 1.8e-224
                   *->Mwlvqil.slyllalllfaslaavslaefqaksnlkeveprrlldeL
                      Mw     + ++ +++++ ++++++++++ +++ n++ v+  +++d+L
     fh19224     5    MWGLAGGrLFGIFSAPVLVAVVCCAQSV-NDPGNMSFVK--ETVDKL 48   

                   LkggsGYdirvRPvgnnksWPDfggkPvtVsinlilaSIdsiDEvNMdYT
                   Lkg   Ydir+RP+        fgg+Pv V++n+++aSId+++EvNMdYT
     fh19224    49 LKG---YDIRLRPD--------FGGPPVCVGMNIDIASIDMVSEVNMDYT 87   

                   tniwlrqeWtDeRLqwnpeedsdtevypgvtlvrtpdgdfAesIWvPDif
                   ++++++q+W+D+RL++           +g++l++t+d+++A+++WvPD++
     fh19224    88 LTMYFQQYWRDKRLAY-----------SGIPLNLTLDNRVADQLWVPDTY 126  

                   faNeKdarfhgitetNvlvRihpnGsvlYsiRltltlACpMDLknfPlDv
                   f N+K++++hg+t++N+++R+hp+G+vlY++R+t+t+AC+MDL+++PlD+
     fh19224   127 FLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDE 176  

                   QnCslefeSygYTtnDikleWkeqpgaVqvdeslfislPeFeLlgvygtr
                   QnC+le+eSygYTt+Di+++W ++ +aV+++e +  +lP+F++++   ++
     fh19224   177 QNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERI--ELPQFSIVE-HRLV 223  

                   ycftsetntGeYpclklsfvLrRrilYYllqLYIPSillviLSwVSFWLp
                   ++ ++ ++tG+Yp+l+lsf+L+R+i+Y++lq+Y+PSil++iLSwVSFW++
     fh19224   224 SR-NVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWIN 272  

                   kDAsgARVsLGITtLLTMTTfssgvresLPavSdyvKAIDvYlvvClvFV
                   +DAs+ARV+LGITt+LTMTT+ +++re+LP+++ yvKAID Yl++C+vFV
     fh19224   273 YDASAARVALGITTVLTMTTINTHLRETLPKIP-YVKAIDMYLMGCFVFV 321  

                   flALLEyafVnyvhhkksaqkkPmPkWlrhlllercarrlckqepgedyr
                   flALLEyafVny++++ ++q+        ++l e+ a  ++ +  +e+ r
     fh19224   322 FLALLEYAFVNYIFFGRGPQRQ-------KKLAEKTAKAKNDRSKSESNR 364  

                   rpaldtaekrddlssvemrpkkggppsngnlLYIgnqgLegvHCPTpDSG
                   ++a++++     l s+e +++                  e          
     fh19224   365 VDAHGNIL----LTSLEVHNEMN----------------E---------- 384  

                   VvCGklaCskterqallhsppPseaqytksystrhGYiPsvlRslalagi
                        ++ ++++  +   s++ s +qy+k    r+G++    R l  + +
     fh19224   385 -----VSGGIGDTRNSAISFDNSGIQYRKQSMPREGHG----RFLGDRSL 425  

                   leevRyIlhhlrkraeseevvrdwkfrakvIDklsrmaFplvfllFNily
                   + +      hlr+r ++ +++++++++++ ID++sr++Fp +f+lFN++y
     fh19224   426 PHKKT----HLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVY 471  

                   wtvY<-*
                   w++Y   
     fh19224   472 WLYY    475  

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