hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-23124038/chunk_1/iprscan-20080809-23124038.nocrc
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Query sequence: fh19555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       205.3    1.3e-58   1
PF00270.19.fs DEAD/DEAH box helicase                       203.5    4.7e-58   1
PF00271.21.fs Helicase conserved C-terminal domain          64.7    2.7e-18   2
PF00271.21.ls Helicase conserved C-terminal domain          39.3    1.2e-08   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1     222   522 ..     1   213 []   203.5  4.7e-58
PF00270.19.ls   1/1     222   522 ..     1   213 []   205.3  1.3e-58
PF00271.21.fs   2/2     612   668 ..     1    56 [.    62.8    1e-17
PF00271.21.ls   1/1     612   671 ..     1    76 []    39.3  1.2e-08

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 222 to 522: score 203.5, E = 4.7e-58
                RF    xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx x   
                   *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.p...
                      tpiQa ++ ++++++ D+l++A+TGSGKTlaf++P++ a+l+ ++++
     fh19555   222    TPIQALTLAPAIRdKLDILGAAETGSGKTLAFAIPMIHAVLQwQkrn 268  

                RF                                                   
                   ..................................................
                     +++++++ ++++++++ + +++++++ + +++  ++++  +++  +++
     fh19555   269 aapppsnteappgetrteagaetrspgkaeaesdalpddtviesealpsd 318  

                RF                                                   
                   ..................................................
                      + + +++++ +++    ++++ ++++++  ++++ ++++++++++ +
     fh19555   319 iaaearaktggtvsdqallfgdddagegpsslirekpvpkqneneeenld 368  

                RF          xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   .........en.nqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgk
                   ++++++ ++e+++  +++++ +k++   lvl+PTreLa Q+ +++ + + 
     fh19555   369 keqtgnlkqELdDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVAR 418  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   giqpdleellglkvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPg
                   +        +g+k a+l+GG+s ++q++ l    +++    p I+v+TPg
     fh19555   419 F--------TGIKTAILVGGMSTQKQQRML----NRR----PEIVVATPG 452  

                RF xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   rLldlllkgrkrega.sldlknlkllVlDEAhrlldmkGfgedleeilrr
                   rL  l+   +++   +  +l++l++lV+DEA+r+ ++ G+ ++l ++l++
     fh19555   453 RLWELI---KEK-HYhLRNLRQLRCLVVDEADRMVEK-GHFAELSQLLEM 497  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   lprpklrrlsqdlpnrqtllfSATlprnvedl<-*
                   l+  +     q++p+rqtl+fSATl+  v      
     fh19555   498 LN-DS-----QYNPKRQTLVFSATLT-LVHQA    522  

PF00270.19.ls: domain 1 of 1, from 222 to 522: score 205.3, E = 1.3e-58
                RF    xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx x   
                   *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.p...
                      tpiQa ++ ++++++ D+l++A+TGSGKTlaf++P++ a+l+ ++++
     fh19555   222    TPIQALTLAPAIRdKLDILGAAETGSGKTLAFAIPMIHAVLQwQkrn 268  

                RF                                                   
                   ..................................................
                     +++++++ ++++++++ + +++++++ + +++  ++++  +++  +++
     fh19555   269 aapppsnteappgetrteagaetrspgkaeaesdalpddtviesealpsd 318  

                RF                                                   
                   ..................................................
                      + + +++++ +++    ++++ ++++++  ++++ ++++++++++ +
     fh19555   319 iaaearaktggtvsdqallfgdddagegpsslirekpvpkqneneeenld 368  

                RF          xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   .........en.nqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgk
                   ++++++ ++e+++  +++++ +k++   lvl+PTreLa Q+ +++ + + 
     fh19555   369 keqtgnlkqELdDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVAR 418  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   giqpdleellglkvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPg
                   +        +g+k a+l+GG+s ++q++ l    +++    p I+v+TPg
     fh19555   419 F--------TGIKTAILVGGMSTQKQQRML----NRR----PEIVVATPG 452  

                RF xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   rLldlllkgrkrega.sldlknlkllVlDEAhrlldmkGfgedleeilrr
                   rL  l+   +++   +  +l++l++lV+DEA+r+ ++ G+ ++l ++l++
     fh19555   453 RLWELI---KEK-HYhLRNLRQLRCLVVDEADRMVEK-GHFAELSQLLEM 497  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   lprpklrrlsqdlpnrqtllfSATlprnvedl<-*
                   l+  +     q++p+rqtl+fSATl+  v      
     fh19555   498 LN-DS-----QYNPKRQTLVFSATLT-LVHQA    522  

PF00271.21.fs: domain 2 of 2, from 612 to 668: score 62.8, E = 1e-17
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      ll+ ++i  + lh+ + q++R++ le+F + + +vL+aTdva+rG+D
     fh19555   612    LLkVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 658  

                   ipdvnlVIny<-*
                   ip v++VI+y   
     fh19555   659 IPKVQHVIHY    668  

PF00271.21.ls: domain 1 of 1, from 612 to 671: score 39.3, E = 1.2e-08
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      ll+ ++i  + lh+ + q++R++ le+F + + +vL+aTdva+rG+D
     fh19555   612    LLkVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLD 658  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip v++VI+y +                 G   
     fh19555   659 IPKVQHVIHYQV-----------------G    671  

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