hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-23124038/chunk_1/iprscan-20080809-23124038.nocrc
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Query sequence: fh19555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 150.8    1.5e-40   1
SM00490                                                  41.6      1e-07   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     217   547 ..     1   219 []   150.8  1.5e-40
SM00490      1/1     607   671 ..     1    86 []    41.6    1e-07

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 217 to 547: score 150.8, E = 1.5e-40
                   *->gf.klrpyQkeaipwlleg.rdvilaapTGsGKTlafllpllellkk
                      gf+ ++p+Q+ ++  +++++ d+++aa+TGsGKTlaf++p+++++++
     fh19555   217    GFsAPTPIQALTLAPAIRDkLDILGAAETGSGKTLAFAIPMIHAVLQ 263  

                   gkplas............................................
                    ++++  +++++++ ++++++++ + +++++++ + +++  ++++  +++
     fh19555   264 WQKRNAapppsnteappgetrteagaetrspgkaeaesdalpddtviese 313  

                   ..................................................
                     +++   + + +++++ +++    ++++ ++++++  ++++ +++++++
     fh19555   314 alpsdiaaearaktggtvsdqallfgdddagegpsslirekpvpkqnene 363  

                   .........................kkgkgprvLvlvPtreLaeQwaeel
                   +++ +++++++ +++ ++++ + + ++++    Lvl+PtreLa Q+++ +
     fh19555   364 eenldkeqtgnlkqelddksatckaYPKRPLLGLVLTPTRELAVQVKQHI 413  

                   kklgpslgvyfvevlkvvglygG.sktkekeqlrklksgktdilvtTpgr
                    + + ++g      +k++ l+gG s    ++q r l +++  i+v+Tpgr
     fh19555   414 DAVARFTG------IKTAILVGGmST---QKQQRMLNRRP-EIVVATPGR 453  

                   Lldll.ngkg..lsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkr
                   L  l+++++ +  +l++l+++++DEa+r+ ++      g+   l +ll+ 
     fh19555   454 LWELIkEKHYhlRNLrQLRCLVVDEADRMVEK------GHFAELSqLLEM 497  

                   l.....pknrqrlllSATppeienllklflnlpelfpnpvfisvgf..tl
                   l++++ +++rq+l++SAT++ +  + +++l+      + ++ + +++ +l
     fh19555   498 LndsqyNPKRQTLVFSATLTLVHQAPARILH------KKHTKKMDKtaKL 541  

                   epieqf<-*
                   + + q+   
     fh19555   542 DLLMQK    547  

SM00490: domain 1 of 1, from 607 to 671: score 41.6, E = 1e-07
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      ++l+ lLk l    +i  + lH+ + q++R + le+F + + +vL+a
     fh19555   607    KRLSGLLKVL----DIMPLTLHACMHQKQRLRNLEQFARLEDCVLLA 649  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdva+rGlDip v +VI+y +                 G   
     fh19555   650 TDVAARGLDIPKVQHVIHYQV-----------------G    671  

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