# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh19857.fasta.nr -Q fh19857.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh19857, 78 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824793 sequences Expectation_n fit: rho(ln(x))= 4.3576+/-0.000179; mu= 5.9182+/- 0.010 mean_var=52.1639+/-10.471, 0's: 44 Z-trim: 49 B-trim: 1543 in 1/65 Lambda= 0.177578 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088352|dbj|BAD92623.1| ribosomal protein S7 v ( 78) 499 134.9 1e-30 gi|14039950|gb|AAK53430.1|AF369932_1 ribosomal pro ( 155) 329 91.5 2.3e-17 gi|73979692|ref|XP_855766.1| PREDICTED: similar to ( 146) 327 91.0 3.1e-17 gi|149051043|gb|EDM03216.1| rCG62292, isoform CRA_ ( 163) 327 91.0 3.4e-17 gi|149270446|ref|XP_001478257.1| PREDICTED: simila ( 163) 327 91.0 3.4e-17 gi|119621461|gb|EAX01056.1| ribosomal protein S7, ( 170) 327 91.1 3.5e-17 gi|109101902|ref|XP_001118095.1| PREDICTED: simila ( 170) 327 91.1 3.5e-17 gi|337518|gb|AAB00969.1| ribosomal protein ( 192) 327 91.1 3.9e-17 gi|49065830|sp|P62083|RS7_RAT 40S ribosomal protei ( 194) 327 91.1 3.9e-17 gi|148699419|gb|EDL31366.1| mCG116065 [Mus musculu ( 194) 327 91.1 3.9e-17 gi|60652833|gb|AAX29111.1| ribosomal protein S7 [s ( 195) 327 91.1 3.9e-17 gi|148705008|gb|EDL36955.1| mCG19129 [Mus musculus ( 213) 327 91.1 4.2e-17 gi|44967447|gb|AAS49571.1| ribosomal protein S7 [L ( 176) 325 90.6 5.2e-17 gi|194220990|ref|XP_001503681.2| PREDICTED: simila ( 300) 327 91.2 5.5e-17 gi|118088892|ref|XP_001234701.1| PREDICTED: simila ( 194) 325 90.6 5.6e-17 gi|118088890|ref|XP_419936.2| PREDICTED: similar t ( 312) 325 90.7 8e-17 gi|28630213|gb|AAN77893.1| ribosomal protein S7 [S ( 176) 322 89.8 8.8e-17 gi|55639547|ref|XP_509573.1| PREDICTED: similar to ( 200) 322 89.8 9.7e-17 gi|58569663|gb|AAW79041.1| GekBS195P [Gekko japoni ( 188) 321 89.5 1.1e-16 gi|161612299|gb|AAI56017.1| Unknown (protein for M ( 194) 321 89.6 1.1e-16 gi|90075490|dbj|BAE87425.1| unnamed protein produc ( 170) 320 89.3 1.2e-16 gi|169205846|ref|XP_001718257.1| PREDICTED: simila ( 200) 320 89.3 1.4e-16 gi|149433601|ref|XP_001521292.1| PREDICTED: simila ( 320) 322 90.0 1.4e-16 gi|929913|emb|CAA24703.1| ribosomal protein S8 [Xe ( 170) 318 88.7 1.7e-16 gi|44967493|gb|AAS49572.1| ribosomal protein S7 [P ( 176) 318 88.8 1.8e-16 gi|134026|sp|P02362|RS7_XENLA 40S ribosomal protei ( 194) 318 88.8 1.9e-16 gi|82655165|emb|CAJ43764.1| 40S ribosomal protein ( 191) 317 88.5 2.3e-16 gi|28610081|gb|AAO48727.1| ribosomal protein S7 [C ( 160) 315 88.0 2.8e-16 gi|28630350|gb|AAN77896.1| ribosomal protein S7 [P ( 194) 314 87.8 3.9e-16 gi|124300799|dbj|BAF45895.1| ribosomal protein S7 ( 194) 313 87.5 4.7e-16 gi|49036473|sp|Q90YR7|RS7_ICTPU 40S ribosomal prot ( 194) 313 87.5 4.7e-16 gi|156181156|gb|ABU54857.1| 40s ribosomal protein ( 194) 312 87.3 5.6e-16 gi|1710775|sp|P50894|RS7_FUGRU 40S ribosomal prote ( 194) 311 87.0 6.7e-16 gi|49036465|sp|P62084|RS7_BRARE 40S ribosomal prot ( 194) 311 87.0 6.7e-16 gi|37547120|ref|XP_015717.5| PREDICTED: hypothetic ( 193) 309 86.5 9.5e-16 gi|61654714|gb|AAX48883.1| S7 [Suberites domuncula ( 190) 308 86.2 1.1e-15 gi|67764415|gb|AAY79228.1| 40S ribosomal protein S ( 73) 300 83.9 2.2e-15 gi|55587228|ref|XP_513479.1| PREDICTED: similar to ( 194) 302 84.7 3.3e-15 gi|117067208|gb|ABK32078.1| ribosomal protein S7 [ ( 195) 302 84.7 3.3e-15 gi|28630209|gb|AAN77891.1| ribosomal protein S7 [B ( 176) 300 84.1 4.4e-15 gi|109131245|ref|XP_001095908.1| PREDICTED: simila ( 194) 295 82.9 1.1e-14 gi|159145678|gb|ABW90376.1| putative ribosomal pro ( 183) 293 82.4 1.6e-14 gi|188572468|gb|ACD65140.1| putative 40S ribosomal ( 193) 290 81.6 2.8e-14 gi|158187828|gb|ABW23203.1| ribosomal protein rps7 ( 135) 288 81.0 3e-14 gi|1351005|sp|P48155|RS7_MANSE 40S ribosomal prote ( 190) 288 81.1 3.9e-14 gi|50284384|emb|CAH04123.1| ribsomal protein S7e [ ( 190) 288 81.1 3.9e-14 gi|154091267|gb|ABS57442.1| ribosomal protein S7 [ ( 190) 288 81.1 3.9e-14 gi|54609295|gb|AAV34863.1| ribosomal protein S7 [B ( 190) 288 81.1 3.9e-14 gi|22758886|gb|AAN05602.1| ribosomal protein S7 [A ( 193) 288 81.1 4e-14 gi|49036475|sp|Q962S0|RS7_SPOFR 40S ribosomal prot ( 190) 287 80.8 4.7e-14 >>gi|62088352|dbj|BAD92623.1| ribosomal protein S7 varia (78 aa) initn: 499 init1: 499 opt: 499 Z-score: 706.4 bits: 134.9 E(): 1e-30 Smith-Waterman score: 499; 100.000% identity (100.000% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 10 20 30 40 50 60 70 fh1985 VIGQHFIMERFSHSESGF :::::::::::::::::: gi|620 VIGQHFIMERFSHSESGF 70 >>gi|14039950|gb|AAK53430.1|AF369932_1 ribosomal protein (155 aa) initn: 329 init1: 329 opt: 329 Z-score: 466.9 bits: 91.5 E(): 2.3e-17 Smith-Waterman score: 329; 98.113% identity (100.000% similar) in 53 aa overlap (10-62:92-144) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|140 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 70 80 90 100 110 120 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF ::::::::::::::::::::::. gi|140 DGSRLIKVHLDKAQQNNVEHKVVTFSGVYKKLTG 130 140 150 >>gi|73979692|ref|XP_855766.1| PREDICTED: similar to 40S (146 aa) initn: 325 init1: 325 opt: 327 Z-score: 464.5 bits: 91.0 E(): 3.1e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:71-139) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|739 RELNITAAKRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 50 60 70 80 90 100 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|739 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 110 120 130 140 >>gi|149051043|gb|EDM03216.1| rCG62292, isoform CRA_b [R (163 aa) initn: 325 init1: 325 opt: 327 Z-score: 463.8 bits: 91.0 E(): 3.4e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:88-156) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|149 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 60 70 80 90 100 110 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|149 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 120 130 140 150 160 >>gi|149270446|ref|XP_001478257.1| PREDICTED: similar to (163 aa) initn: 325 init1: 325 opt: 327 Z-score: 463.8 bits: 91.0 E(): 3.4e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:88-156) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|149 GKHVVFIAQRRILPKPTQKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 60 70 80 90 100 110 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|149 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 120 130 140 150 160 >>gi|119621461|gb|EAX01056.1| ribosomal protein S7, isof (170 aa) initn: 325 init1: 325 opt: 327 Z-score: 463.6 bits: 91.1 E(): 3.5e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:95-163) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|119 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 70 80 90 100 110 120 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|119 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 130 140 150 160 170 >>gi|109101902|ref|XP_001118095.1| PREDICTED: similar to (170 aa) initn: 325 init1: 325 opt: 327 Z-score: 463.6 bits: 91.1 E(): 3.5e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:95-163) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|109 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 70 80 90 100 110 120 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|109 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 130 140 150 160 170 >>gi|337518|gb|AAB00969.1| ribosomal protein (192 aa) initn: 325 init1: 325 opt: 327 Z-score: 462.8 bits: 91.1 E(): 3.9e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:117-185) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|337 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 90 100 110 120 130 140 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|337 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 150 160 170 180 190 >>gi|49065830|sp|P62083|RS7_RAT 40S ribosomal protein S7 (194 aa) initn: 325 init1: 325 opt: 327 Z-score: 462.8 bits: 91.1 E(): 3.9e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:119-187) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|490 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 90 100 110 120 130 140 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|490 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 150 160 170 180 190 >>gi|148699419|gb|EDL31366.1| mCG116065 [Mus musculus] (194 aa) initn: 325 init1: 325 opt: 327 Z-score: 462.8 bits: 91.1 E(): 3.9e-17 Smith-Waterman score: 327; 76.812% identity (89.855% similar) in 69 aa overlap (10-78:119-187) 10 20 30 fh1985 VAYLLNYSFSRTLTAVHDAILEDLVFPSEIVGKRIRVKL :::::::::::::::::::::::::::::: gi|148 GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKL 90 100 110 120 130 140 40 50 60 70 fh1985 DGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSESGF :::::::::::::::::::::: ...... .. .: gi|148 DGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 150 160 170 180 190 78 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 23:37:11 2008 done: Sat Aug 9 23:40:26 2008 Total Scan time: 438.360 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]