hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-23473338/chunk_1/iprscan-20080809-23473338.nocrc
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Query sequence: fh20087
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 104.7    1.1e-26   5
SM00349                                                  66.9    2.5e-15   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      50   103 ..     1    62 []    66.9  2.5e-15
SM00355      1/5      97   120 ..     1    23 []     0.3    3e+02
SM00355      2/5     263   285 ..     1    23 []    26.0   0.0051
SM00355      3/5     291   313 ..     1    23 []    22.0    0.085
SM00355      4/5     319   341 ..     1    23 []    27.3   0.0021
SM00355      5/5     347   369 ..     1    23 []    29.2  0.00058

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 50 to 103: score 66.9, E = 2.5e-15
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeDVAV F++ EW+ L   QrnLY++VMlEN +nLvSL     sk
     fh20087    50    VTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLENLRNLVSLAE---SK 93   

                   pdliskLEqgeEpwi<-*
                   p++ ++       +    
     fh20087    94 PEVHTCP-----SCP    103  

SM00355: domain 1 of 5, from 97 to 120: score 0.3, E = 3e+02
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++Cp  C+  f s++ L +   + H   
     fh20087    97    HTCPS-CPLAFGSQqFLSQDELhNH    120  

SM00355: domain 2 of 5, from 263 to 285: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C + Cg+ fs+k++L+ H+r+H   
     fh20087   263    QVCRE-CGRGFSRKsQLIIHQRTH    285  

SM00355: domain 3 of 5, from 291 to 313: score 22.0, E = 0.085
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cg+ f  ++ L++H+ +H   
     fh20087   291    YVCGE-CGRGFIVEsVLRNHLSTH    313  

SM00355: domain 4 of 5, from 319 to 341: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ fs k+ L+rH+r+H   
     fh20087   319    YVCSH-CGRGFSCKpYLIRHQRTH    341  

SM00355: domain 5 of 5, from 347 to 369: score 29.2, E = 0.00058
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg+ f+ k++L++H+r+H   
     fh20087   347    FMCTV-CGRGFREKsELIKHQRIH    369  

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