hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-23534717/chunk_1/iprscan-20080809-23534717.nocrc
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Query sequence: fh20163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08487.1.ls Vault protein inter-alpha-trypsin              271.5    1.5e-78   1
PF08487.1.fs Vault protein inter-alpha-trypsin              269.5      6e-78   1
PF00092.18.fs von Willebrand factor type A domain            122.4    2.5e-38   1
PF00092.18.ls von Willebrand factor type A domain            124.3    3.1e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08487.1.fs   1/1      16   133 ..     1   119 []   269.5    6e-78
PF08487.1.ls   1/1      16   133 ..     1   119 []   271.5  1.5e-78
PF00092.18.fs   1/1     259   442 ..     1   195 []   122.4  2.5e-38
PF00092.18.ls   1/1     259   442 ..     1   195 []   124.3  3.1e-34

Alignments of top-scoring domains:
PF08487.1.fs: domain 1 of 1, from 16 to 133: score 269.5, E = 6e-78
                   *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA
                      ng++iySl+V+s+V+SRfAhtvVtsrvvNra+++qEa+F+++lPkkA
     fh20163    16    NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKA 62   

                   FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq
                   FItnF+m+I+g+ty+G+IKeK+eAq++Y++Ava+GksAgLV+++gr+mEq
     fh20163    63 FITNFSMIIDGMTYPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQ 112  

                   FtvsVanVapnsKVtFeLtYeE<-*
                   F+vsV +Vapn+K+tFeL+YeE   
     fh20163   113 FQVSV-SVAPNAKITFELVYEE    133  

PF08487.1.ls: domain 1 of 1, from 16 to 133: score 271.5, E = 1.5e-78
                   *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA
                      ng++iySl+V+s+V+SRfAhtvVtsrvvNra+++qEa+F+++lPkkA
     fh20163    16    NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKA 62   

                   FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq
                   FItnF+m+I+g+ty+G+IKeK+eAq++Y++Ava+GksAgLV+++gr+mEq
     fh20163    63 FITNFSMIIDGMTYPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQ 112  

                   FtvsVanVapnsKVtFeLtYeE<-*
                   F+vsV +Vapn+K+tFeL+YeE   
     fh20163   113 FQVSV-SVAPNAKITFELVYEE    133  

PF00092.18.fs: domain 1 of 1, from 259 to 442: score 122.4, E = 2.5e-38
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      ++vF++D SgS+++++  ++ ++++ k+++    ++  ++++ l+ +
     fh20163   259    NVVFVIDKSGSMSGRK-IQQTREALIKILD----DLSPRDQFNLIVF 300  

                   ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf
                   s++++ + +     s +++++a ++    +  GgTn +++A+  a+++l 
     fh20163   301 STEATQWRPSLVPASAENVNKARsFAAGIQALGGTN-INDAMLMAVQLLD 349  

                   sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg
                   ss       ++  R +e+ + ++illTDG ++ g+ +++ +++  +++  
     fh20163   350 SS-------NQEERLpEGSVSLIILLTDGDPTVGETNPrSIQNNVREAVS 392  

                   vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe
                    +  +f+ G+G+dv++a+L+++a   +++g + ++ +++++ lqlqd+++
     fh20163   393 GRYSLFCLGFGFDVSYAFLEkLA--LDNGGLARRIHEDSDSALQLQDFYQ 440  

                   ql<-*
                   ++   
     fh20163   441 EV    442  

PF00092.18.ls: domain 1 of 1, from 259 to 442: score 124.3, E = 3.1e-34
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      ++vF++D SgS+++++  ++ ++++ k+++    ++  ++++ l+ +
     fh20163   259    NVVFVIDKSGSMSGRK-IQQTREALIKILD----DLSPRDQFNLIVF 300  

                   ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf
                   s++++ + +     s +++++a ++    +  GgTn +++A+  a+++l 
     fh20163   301 STEATQWRPSLVPASAENVNKARsFAAGIQALGGTN-INDAMLMAVQLLD 349  

                   sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg
                   ss       ++  R +e+ + ++illTDG ++ g+ +++ +++  +++  
     fh20163   350 SS-------NQEERLpEGSVSLIILLTDGDPTVGETNPrSIQNNVREAVS 392  

                   vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe
                    +  +f+ G+G+dv++a+L+++a   +++g + ++ +++++ lqlqd+++
     fh20163   393 GRYSLFCLGFGFDVSYAFLEkLA--LDNGGLARRIHEDSDSALQLQDFYQ 440  

                   ql<-*
                   ++   
     fh20163   441 EV    442  

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