hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-23534717/chunk_1/iprscan-20080809-23534717.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh20163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00609                                                 277.7    8.9e-79   1
SM00327                                                 126.9    2.3e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00609    1/1       6   133 ..     1   132 []   277.7  8.9e-79
SM00327    1/1     257   441 ..     1   193 []   126.9  2.3e-33

Alignments of top-scoring domains:
SM00609: domain 1 of 1, from 6 to 133: score 277.7, E = 8.9e-79
                   *->llakrglltaevngVplySlkVnskVtSRfAhtvVTsrvvNrapdpa
                      l   ++ll    ng+++ySl+V+s+V+SRfAhtvVTsrvvNra +++
     fh20163     6    LQPPSSLLVQ--NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRA-NTV 49   

                   qevvFdvelPktAFISnFamTiDGktyvGeiKEKavAqkqYekAvaqGkt
                   qe++F++elPk+AFI+nF+m+iDG+ty+G iKEKa+Aq+qY++Ava+Gk+
     fh20163    50 QEATFQMELPKKAFITNFSMIIDGMTYPGIIKEKAEAQAQYSAAVAKGKS 99   

                   AgLVrasgrkmEqFtvsVGnvaPgsKVtFeLtYeE<-*
                   AgLV+a+gr+mEqF+vsV +vaP++K+tFeL+YeE   
     fh20163   100 AGLVKATGRNMEQFQVSV-SVAPNAKITFELVYEE    133  

SM00327: domain 1 of 1, from 257 to 441: score 126.9, E = 2.3e-33
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      p++vvf++D SgSm+g+++++++e++ k++++l+++d++ l+ Fs++
     fh20163   257    PKNVVFVIDKSGSMSGRKIQQTREALiKILDDLSpRDQFNLIVFSTE 303  

                   vrvefpln....sqskdallealaslsykglkdyslgggTnlg.ALqyal
                   ++ + p   + ++ +  ++++  a+++        + ggTn+++A+ +a+
     fh20163   304 ATQWRPSLvpasAENVNKARSFAAGIQ--------ALGGTNINdAMLMAV 345  

                   enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak
                   + l s+ + +r  +g       +  ++il+TDG ++ g+++p+ i+  ++
     fh20163   346 QLLDSSNQEeRLPEG-------SVSLIILLTDGDPTVGETNPRSIQNNVR 388  

                   elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld
                   e+ + ++++f++g+g +  + +l+++a +++g+  ++     ed++s+l+
     fh20163   389 EAVSGRYSLFCLGFGFDvSYaFLEKLALDNgGLARRI----HEDSDSALQ 434  

                   llidlll<-*
                   l+   ++   
     fh20163   435 LQDFYQE    441  

//