hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-00001987/chunk_1/iprscan-20080810-00001987.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh20327 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01410.8.fs Fibrillar collagen C-terminal domain 489.5 5.8e-198 1 PF01391.8.fs Collagen triple helix repeat (20 copies) 557.8 1e-164 13 PF01391.8.ls Collagen triple helix repeat (20 copies) 515.1 7.4e-152 11 PF01410.8.ls Fibrillar collagen C-terminal domain 491.4 9.7e-145 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01391.8.fs 1/13 64 93 .. 31 60 .] 20.5 9.7e-05 PF01391.8.ls 1/11 67 126 .. 1 60 [] 45.8 1.3e-10 PF01391.8.fs 2/13 94 153 .. 1 60 [] 57.3 1.6e-14 PF01391.8.ls 2/11 127 186 .. 1 60 [] 42.2 1.6e-09 PF01391.8.fs 3/13 154 213 .. 1 60 [] 48.5 3.5e-12 PF01391.8.ls 3/11 193 252 .. 1 60 [] 56.0 1.1e-13 PF01391.8.fs 4/13 214 248 .. 1 35 [. 25.3 5.2e-06 PF01391.8.fs 5/13 250 306 .. 1 57 [. 46.7 1.1e-11 PF01391.8.ls 4/11 256 315 .. 1 60 [] 41.6 2.4e-09 PF01391.8.fs 6/13 307 366 .. 1 60 [] 51.3 6.5e-13 PF01391.8.ls 5/11 319 378 .. 1 60 [] 56.0 1.2e-13 PF01391.8.fs 7/13 367 426 .. 1 60 [] 48.1 4.6e-12 PF01391.8.ls 6/11 379 438 .. 1 60 [] 36.7 7.5e-08 PF01391.8.fs 8/13 430 489 .. 1 60 [] 43.2 9e-11 PF01391.8.ls 7/11 439 498 .. 1 60 [] 43.4 7.1e-10 PF01391.8.fs 9/13 490 541 .. 1 52 [. 41.2 3.1e-10 PF01391.8.ls 8/11 499 558 .. 1 60 [] 49.2 1.3e-11 PF01391.8.fs 10/13 544 603 .. 1 60 [] 46.3 1.4e-11 PF01391.8.ls 9/11 559 618 .. 1 60 [] 46.2 1e-10 PF01391.8.fs 11/13 604 663 .. 1 60 [] 58.1 9.6e-15 PF01391.8.ls 10/11 625 684 .. 1 60 [] 50.3 5.8e-12 PF01391.8.fs 12/13 673 732 .. 1 60 [] 55.0 6.6e-14 PF01391.8.ls 11/11 694 753 .. 1 60 [] 47.5 4e-11 PF01391.8.fs 13/13 733 753 .. 40 60 .] 16.4 0.0012 PF01410.8.ls 1/1 804 1015 .. 1 226 [] 491.4 9.7e-145 PF01410.8.fs 1/1 804 1015 .. 1 226 [] 489.5 5.8e-198 Alignments of top-scoring domains: PF01391.8.fs: domain 1 of 13, from 64 to 93: score 20.5, E = 9.7e-05 *->GppGepGpPGppGppGppGppGapGapGpp<-* G G+pG+PG+ G+ G++G +G+pG+ G++ fh20327 64 GSTGFPGFPGANGEKGARGVAGKPGPRGQR 93 PF01391.8.ls: domain 1 of 11, from 67 to 126: score 45.8, E = 1.3e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pG++G+ G++G +G pGp+G +Gp Gp+G +G+ Gp G+pGp fh20327 67 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP 113 pGppGapGapGpp<-* +G G +G+pGpp fh20327 114 KGTSGGDGPPGPP 126 PF01391.8.fs: domain 2 of 13, from 94 to 153: score 57.3, E = 1.6e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp Gp+G++G++Gp+G+pGp+G +G+ GppGppGe+Gp+Gp+Gp G+ fh20327 94 GPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGF 140 pGppGapGapGpp<-* pGp+G+pG+pG+ fh20327 141 PGPKGPPGPPGKD 153 PF01391.8.ls: domain 2 of 11, from 127 to 186: score 42.2, E = 1.6e-09 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++Gp+Gp Gp G pGp+GppGp+G+ G pG+pG +G+ G +G+ Gp fh20327 127 GERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 173 pGppGapGapGpp<-* pGp G G+ Gp fh20327 174 PGPGGVVGPQGPT 186 PF01391.8.fs: domain 3 of 13, from 154 to 213: score 48.5, E = 3.5e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pG +G++G G+ GppGp G Gp+Gp Ge Gp G +G+pGp fh20327 154 GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 200 pGppGapGapGpp<-* pGppG+ G pG++ fh20327 201 PGPPGEQGLPGAA 213 PF01391.8.ls: domain 3 of 11, from 193 to 252: score 56.0, E = 1.1e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G pGppGppG+ G pG++G Ga+G+pGp+G +G +Gp+G G+ fh20327 193 GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 239 pGppGapGapGpp<-* pG++G pGa G+p fh20327 240 PGERGLPGAQGAP 252 PF01391.8.fs: domain 4 of 13, from 214 to 248: score 25.3, E = 5.2e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGe<-* G+ G G pGp+G G+ Gp+G +G+pG++G pG+ fh20327 214 GKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGA 248 PF01391.8.fs: domain 5 of 13, from 250 to 306: score 46.7, E = 1.1e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG+ G+ Gp+GppGp G pG++G++G +Gp G pG+PGp+GppGp fh20327 250 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGP 296 pGppGapGap<-* +G++GapG++ fh20327 297 AGEKGAPGEK 306 PF01391.8.ls: domain 4 of 11, from 256 to 315: score 41.6, E = 2.4e-09 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G Gp+GppGp G pG++G +G aG+ G pG pG+ GpPGp+G+ G+ fh20327 256 GGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGA 302 pGppGapGapGpp<-* pG++G+ G++G fh20327 303 PGEKGPQGPAGRD 315 PF01391.8.fs: domain 6 of 13, from 307 to 366: score 51.3, E = 6.5e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp Gp+G+ G +Gp G pGp+GpaG+pG+ G++Ge G+PG++G G fh20327 307 GPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD 353 pGppGapGapGpp<-* +G+ G+pG+pG fh20327 354 KGENGPPGPPGLQ 366 PF01391.8.ls: domain 5 of 11, from 319 to 378: score 56.0, E = 1.2e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G+pGp+Gp+G pG+ G +G+ G+pG +G +G++G+ GppGppG fh20327 319 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGL 365 pGppGapGapGpp<-* +Gp GapG +G fh20327 366 QGPVGAPGIAGGD 378 PF01391.8.fs: domain 7 of 13, from 367 to 426: score 48.1, E = 4.6e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G pG +G G+pGp+G++G G +G+ G++G+pGpPGp G G fh20327 367 GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGL 413 pGppGapGapGpp<-* pGppG++G+ G + fh20327 414 PGPPGEKGENGDV 426 PF01391.8.ls: domain 6 of 11, from 379 to 438: score 36.7, E = 7.5e-08 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pGp+G G G++G+ G+ G +G+pGp G +G pGpPG +G++G fh20327 379 GEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGD 425 pGppGapGapGpp<-* Gp G+pG+pGp+ fh20327 426 VGPMGPPGPPGPR 438 PF01391.8.fs: domain 8 of 13, from 430 to 489: score 43.2, E = 9e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGppGp+Gp+Gp G+ Gp+Gp+G+ G+ G Ge+G+PG +G pGp fh20327 430 GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 476 pGppGapGapGpp<-* pG++G G++G++ fh20327 477 PGEAGVGGPKGER 489 PF01391.8.ls: domain 7 of 11, from 439 to 498: score 43.4, E = 7.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp Gp G+ Gp+GppG G G G++G+pG +G pGpPG +G+ Gp fh20327 439 GPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 485 pGppGapGapGpp<-* +G++G++G++Gpp fh20327 486 KGERGEKGEAGPP 498 PF01391.8.fs: domain 9 of 13, from 490 to 541: score 41.2, E = 3.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G++GppG++GppG++GppG++G++G+pGp G+pG PGppG+ Gp fh20327 490 GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGP 536 pGppG<-* +G++G fh20327 537 AGQDG 541 PF01391.8.ls: domain 8 of 11, from 499 to 558: score 49.2, E = 1.3e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++GppG++GppG +Gp+G pGp G+pG+pGppGe Gp G++G+ G fh20327 499 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGD 545 pGppGapGapGpp<-* +G++G pG pGpp fh20327 546 KGEDGDPGQPGPP 558 PF01391.8.fs: domain 10 of 13, from 544 to 603: score 46.3, E = 1.4e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G+ G pG pGppGp+G++Gp+G+pG +GppG++G+ G +G+ G+ fh20327 544 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA 590 pGppGapGapGpp<-* +G++Ga G+pG+ fh20327 591 KGEAGAEGPPGKT 603 PF01391.8.ls: domain 9 of 11, from 559 to 618: score 46.2, E = 1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G++GppGppG +GppG++G+ G +G++G++Ge+G+ GppG+ Gp fh20327 559 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP 605 pGppGapGapGpp<-* Gp+G++G pGp fh20327 606 VGPQGPAGKPGPE 618 PF01391.8.fs: domain 11 of 13, from 604 to 663: score 58.1, E = 9.6e-15 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp Gp+Gp+G pGp G +G pGp G++G pG++G +GpPGp GppG fh20327 604 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 650 pGppGapGapGpp<-* pG +G pG++G+ fh20327 651 PGLKGDPGSKGEK 663 PF01391.8.ls: domain 10 of 11, from 625 to 684: score 50.3, E = 5.8e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G++G pG++G++GppGp Gp+G pG +G+pG +G+ G+pG G fh20327 625 GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 671 pGppGapGapGpp<-* GppG+ G++G + fh20327 672 IGPPGEQGEKGDR 684 PF01391.8.fs: domain 12 of 13, from 673 to 732: score 55.0, E = 6.6e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG++G++G++G pG G pG++G G pGp+G+ GpPGppG pGp fh20327 673 GPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 719 pGppGapGapGpp<-* +Gp+G++G+ Gp+ fh20327 720 QGPKGNKGSTGPA 732 PF01391.8.ls: domain 11 of 11, from 694 to 753: score 47.5, E = 4e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G G pGp+Gp GppGppG +G++Gp+G++G Gp G++G G fh20327 694 GAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGL 740 pGppGapGapGpp<-* pGppG+pG+pG++ fh20327 741 PGPPGPPGPPGEV 753 PF01391.8.fs: domain 13 of 13, from 733 to 753: score 16.4, E = 0.0012 *->GppGppGppGppGapGapGpp<-* G++G G pGppG+pG+pG++ fh20327 733 GQKGDSGLPGPPGPPGPPGEV 753 PF01410.8.ls: domain 1 of 1, from 804 to 1015: score 491.4, E = 9.7e-145 *->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf +k+P+G +++nPARtCkDL+L+hp+f++GeYWiDPNqGC++D++kV+ fh20327 804 MKFPMG-TQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVY 849 CnkrfetGvgeTCisptpksvpkRiksWykgkskdkKhvWFgetmegGfk Cn f++G geTCi+p++ks++ Ri+sW+k+k+ ++WF+e++ +G++ fh20327 850 CN--FTSG-GETCIYPDKKSEGVRISSWPKEKP----GSWFSEFK-RGKL 891 fsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNlk +sY+d e+n+ i++vQ+TFL+LL+++A+QN+TYhC++S+A++D ++G+++ fh20327 892 LSYLDVEGNS-INMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYD 940 kAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkKt kAl+++gSnD+E+s+d n++F++t++ DGC+sr+g+ +KTViE++T+K+ fh20327 941 KALRFLGSNDEEMSYD-NNPFIKTLY--DGCASRKGY-EKTVIEINTPKI 986 tRLPIvDiApsDiGgedQeFGveiGPVCF<-* +++PIvD++++D+G+++Q+FG+e+GPVCF fh20327 987 DQVPIVDVMINDFGDQNQKFGFEVGPVCF 1015 PF01410.8.fs: domain 1 of 1, from 804 to 1015: score 489.5, E = 5.8e-198 *->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf +k+P+G +++nPARtCkDL+L+hp+f++GeYWiDPNqGC++D++kV+ fh20327 804 MKFPMG-TQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVY 849 CnkrfetGvgeTCisptpksvpkRiksWykgkskdkKhvWFgetmegGfk Cn f++G geTCi+p++ks++ Ri+sW+k+k+ ++WF+e++ +G++ fh20327 850 CN--FTSG-GETCIYPDKKSEGVRISSWPKEKP----GSWFSEFK-RGKL 891 fsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNlk +sY+d e+n+ i++vQ+TFL+LL+++A+QN+TYhC++S+A++D ++G+++ fh20327 892 LSYLDVEGNS-INMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYD 940 kAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkKt kAl+++gSnD+E+s+d n++F++t++ DGC+sr+g+ +KTViE++T+K+ fh20327 941 KALRFLGSNDEEMSYD-NNPFIKTLY--DGCASRKGY-EKTVIEINTPKI 986 tRLPIvDiApsDiGgedQeFGveiGPVCF<-* +++PIvD++++D+G+++Q+FG+e+GPVCF fh20327 987 DQVPIVDVMINDFGDQNQKFGFEVGPVCF 1015 //