hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-00062533/chunk_1/iprscan-20080810-00062533.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh20339 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02946.5.fs GTF2I-like repeat 866.3 1.5e-284 5 PF02946.5.ls GTF2I-like repeat 874.7 4.1e-260 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02946.5.fs 1/5 135 210 .. 1 76 [] 157.5 1.8e-51 PF02946.5.ls 1/5 135 210 .. 1 76 [] 159.5 8e-45 PF02946.5.ls 2/5 358 433 .. 1 76 [] 177.1 4e-50 PF02946.5.fs 2/5 358 433 .. 1 76 [] 175.1 3e-57 PF02946.5.ls 3/5 572 647 .. 1 76 [] 186.1 7.7e-53 PF02946.5.fs 3/5 572 647 .. 1 76 [] 184.1 3.2e-60 PF02946.5.fs 4/5 697 772 .. 1 76 [] 184.0 3.6e-60 PF02946.5.ls 4/5 697 772 .. 1 76 [] 186.0 8.6e-53 PF02946.5.fs 5/5 794 867 .. 1 74 [. 165.5 4.3e-54 PF02946.5.ls 5/5 794 869 .. 1 76 [] 165.9 9.2e-47 Alignments of top-scoring domains: PF02946.5.fs: domain 1 of 5, from 135 to 210: score 157.5, E = 1.8e-51 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+Vee+F++ Y+EALG++++V++PYe++l++P+ ++V+GLPEG++ fh20339 135 LRKMVEEVFDVLYSEALGRASVVPLPYERLLREPGLLAVQGLPEGLA 181 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrP++Y++++L++ILe++++I+F++KRP fh20339 182 FRRPAEYDPKALMAILEHSHRIRFKLKRP 210 PF02946.5.ls: domain 1 of 5, from 135 to 210: score 159.5, E = 8e-45 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRk+Vee+F++ Y+EALG++++V++PYe++l++P+ ++V+GLPEG++ fh20339 135 LRKMVEEVFDVLYSEALGRASVVPLPYERLLREPGLLAVQGLPEGLA 181 FRrPstYGiprLerILeakekIkFvIKRP<-* FRrP++Y++++L++ILe++++I+F++KRP fh20339 182 FRRPAEYDPKALMAILEHSHRIRFKLKRP 210 PF02946.5.ls: domain 2 of 5, from 358 to 433: score 177.1, E = 4e-50 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR++V++LFn++Y+EALGl+++V+VPY+ki+++Peav+++G+P++IP fh20339 358 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIP 404 FRrPstYGiprLerILeakekIkFvIKRP<-* F+rP+tYG+p+L+rILe++++I+F+IKR fh20339 405 FKRPCTYGVPKLKRILEERHSIHFIIKRM 433 PF02946.5.fs: domain 2 of 5, from 358 to 433: score 175.1, E = 3e-57 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR++V++LFn++Y+EALGl+++V+VPY+ki+++Peav+++G+P++IP fh20339 358 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIP 404 FRrPstYGiprLerILeakekIkFvIKRP<-* F+rP+tYG+p+L+rILe++++I+F+IKR fh20339 405 FKRPCTYGVPKLKRILEERHSIHFIIKRM 433 PF02946.5.ls: domain 3 of 5, from 572 to 647: score 186.1, E = 7.7e-53 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVe LFn++Y++A+G++epVkVPY+k+l++Pe+++V+GLPEGI+ fh20339 572 LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMHPEELFVVGLPEGIS 618 FRrPstYGiprLerILeakekIkFvIKRP<-* +RrP+++Gi++L++ILea+++I+FvIKRP fh20339 619 LRRPNCFGIAKLRKILEASNSIQFVIKRP 647 PF02946.5.fs: domain 3 of 5, from 572 to 647: score 184.1, E = 3.2e-60 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LRkqVe LFn++Y++A+G++epVkVPY+k+l++Pe+++V+GLPEGI+ fh20339 572 LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMHPEELFVVGLPEGIS 618 FRrPstYGiprLerILeakekIkFvIKRP<-* +RrP+++Gi++L++ILea+++I+FvIKRP fh20339 619 LRRPNCFGIAKLRKILEASNSIQFVIKRP 647 PF02946.5.fs: domain 4 of 5, from 697 to 772: score 184.0, E = 3.6e-60 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV++LFn+KYgEALG+k+pV+VPY++i+snP++v++eGLP+GIP fh20339 697 LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIP 743 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+P+t+G+++LerIL++++kIkF+++RP fh20339 744 FRKPCTFGSQNLERILAVADKIKFTVTRP 772 PF02946.5.ls: domain 4 of 5, from 697 to 772: score 186.0, E = 8.6e-53 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV++LFn+KYgEALG+k+pV+VPY++i+snP++v++eGLP+GIP fh20339 697 LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIP 743 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+P+t+G+++LerIL++++kIkF+++RP fh20339 744 FRKPCTFGSQNLERILAVADKIKFTVTRP 772 PF02946.5.fs: domain 5 of 5, from 794 to 867: score 165.5, E = 4.3e-54 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV+eLFneKYgEALGl++pV VPY++i+++P+av+V+GLP++IP fh20339 794 LREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIP 840 FRrPstYGiprLerILeakekIkFvIK<-* FR+P+tY+i+rLe+IL+a+e++++vI+ fh20339 841 FRNPNTYDIHRLEKILKAREHVRMVII 867 PF02946.5.ls: domain 5 of 5, from 794 to 869: score 165.9, E = 9.2e-47 *->LRkqVeeLFneKYgEALGlkepVkVPYekilsnPeavyVeGLPEGIP LR+qV+eLFneKYgEALGl++pV VPY++i+++P+av+V+GLP++IP fh20339 794 LREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIP 840 FRrPstYGiprLerILeakekIkFvIKRP<-* FR+P+tY+i+rLe+IL+a+e++++vI+ fh20339 841 FRNPNTYDIHRLEKILKAREHVRMVIINQ 869 //