# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh20564.fasta.nr -Q fh20564.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh20564, 347 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6818091 sequences Expectation_n fit: rho(ln(x))= 5.8168+/-0.0002; mu= 8.1012+/- 0.011 mean_var=109.7621+/-20.728, 0's: 38 Z-trim: 57 B-trim: 250 in 1/64 Lambda= 0.122419 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088360|dbj|BAD92627.1| fibroblast growth fact ( 347) 2438 440.9 1.6e-121 gi|114666162|ref|XP_001170209.1| PREDICTED: simila ( 197) 433 86.5 4.2e-15 gi|2494457|sp|Q92914|FGF11_HUMAN Fibroblast growth ( 225) 433 86.6 4.7e-15 gi|73955576|ref|XP_849741.1| PREDICTED: similar to ( 225) 433 86.6 4.7e-15 gi|109113102|ref|XP_001108934.1| PREDICTED: fibrob ( 225) 433 86.6 4.7e-15 gi|194217614|ref|XP_001918183.1| PREDICTED: simila ( 224) 423 84.8 1.6e-14 gi|76677472|ref|XP_868947.1| PREDICTED: similar to ( 225) 422 84.6 1.8e-14 gi|44890563|gb|AAH66859.1| Fgf11 protein [Mus musc ( 197) 417 83.7 3e-14 gi|18496379|dbj|BAB84565.1| FGF11 [Rattus norvegic ( 225) 417 83.7 3.3e-14 gi|2494458|sp|P70378|FGF11_MOUSE Fibroblast growth ( 225) 417 83.7 3.3e-14 gi|149577432|ref|XP_001514670.1| PREDICTED: simila ( 173) 363 74.1 2e-11 gi|189524276|ref|XP_001920354.1| PREDICTED: simila ( 247) 293 61.9 1.4e-07 gi|47219394|emb|CAG01557.1| unnamed protein produc ( 222) 290 61.3 1.8e-07 gi|47209978|emb|CAF92794.1| unnamed protein produc ( 64) 276 58.3 4.2e-07 gi|190338191|gb|AAI62946.1| Fgf11 protein [Danio r ( 247) 280 59.6 6.8e-07 gi|56201426|dbj|BAD72885.1| FGF11 [Danio rerio] ( 248) 280 59.6 6.8e-07 gi|47228278|emb|CAG07673.1| unnamed protein produc ( 72) 218 48.1 0.00056 >>gi|62088360|dbj|BAD92627.1| fibroblast growth factor 1 (347 aa) initn: 2438 init1: 2438 opt: 2438 Z-score: 2336.9 bits: 440.9 E(): 1.6e-121 Smith-Waterman score: 2438; 100.000% identity (100.000% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 40 50 60 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG 70 80 90 100 110 120 130 140 150 160 170 180 fh2056 SPKVEGGGPGRQSPCQTVPQFPFSFVHNPESPYFRGQGEGLRGCLAPRKPRSSCSSPLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SPKVEGGGPGRQSPCQTVPQFPFSFVHNPESPYFRGQGEGLRGCLAPRKPRSSCSSPLPN 130 140 150 160 170 180 190 200 210 220 230 240 fh2056 TAVPTPIVLRLRAGSRDSFNLERRGPGVSRCLGHPKDFCSSSRTPPPSPRLPRFSRSSTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TAVPTPIVLRLRAGSRDSFNLERRGPGVSRCLGHPKDFCSSSRTPPPSPRLPRFSRSSTP 190 200 210 220 230 240 250 260 270 280 290 300 fh2056 GLGSSWSSSAGSEPISPALPRVSLQLPRQPALYAPSSCDLRFKNGAGHPSHNPRATPKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GLGSSWSSSAGSEPISPALPRVSLQLPRQPALYAPSSCDLRFKNGAGHPSHNPRATPKSG 250 260 270 280 290 300 310 320 330 340 fh2056 PVGSGDPTLAGTQTQFTARDGRRLGGRTTYKGGQGSRQRASDGGGEL ::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PVGSGDPTLAGTQTQFTARDGRRLGGRTTYKGGQGSRQRASDGGGEL 310 320 330 340 >>gi|114666162|ref|XP_001170209.1| PREDICTED: similar to (197 aa) initn: 433 init1: 433 opt: 433 Z-score: 426.2 bits: 86.5 E(): 4.2e-15 Smith-Waterman score: 433; 100.000% identity (100.000% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|114 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::::::::: gi|114 SLCQKQLLILLSKVRLCGGRPARPDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|2494457|sp|Q92914|FGF11_HUMAN Fibroblast growth fac (225 aa) initn: 433 init1: 433 opt: 433 Z-score: 425.5 bits: 86.6 E(): 4.7e-15 Smith-Waterman score: 433; 100.000% identity (100.000% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|249 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::::::::: gi|249 SLCQKQLLILLSKVRLCGGRPARPDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|73955576|ref|XP_849741.1| PREDICTED: similar to Fib (225 aa) initn: 460 init1: 433 opt: 433 Z-score: 425.5 bits: 86.6 E(): 4.7e-15 Smith-Waterman score: 433; 100.000% identity (100.000% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|739 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::::::::: gi|739 SLCQKQLLILLSKVRLCGGRPARPDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|109113102|ref|XP_001108934.1| PREDICTED: fibroblast (225 aa) initn: 433 init1: 433 opt: 433 Z-score: 425.5 bits: 86.6 E(): 4.7e-15 Smith-Waterman score: 433; 100.000% identity (100.000% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|109 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::::::::: gi|109 SLCQKQLLILLSKVRLCGGRPARPDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|194217614|ref|XP_001918183.1| PREDICTED: similar to (224 aa) initn: 423 init1: 423 opt: 423 Z-score: 416.0 bits: 84.8 E(): 1.6e-14 Smith-Waterman score: 423; 100.000% identity (100.000% similar) in 63 aa overlap (25-87:1-63) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|194 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG ::::::::::::::::::::::::::: gi|194 SLCQKQLLILLSKVRLCGGRPARPDRGLEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|76677472|ref|XP_868947.1| PREDICTED: similar to fib (225 aa) initn: 422 init1: 422 opt: 422 Z-score: 415.0 bits: 84.6 E(): 1.8e-14 Smith-Waterman score: 422; 98.438% identity (98.438% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|766 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG ::::::::::::::::::::::: :::: gi|766 SLCQKQLLILLSKVRLCGGRPARTDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|44890563|gb|AAH66859.1| Fgf11 protein [Mus musculus (197 aa) initn: 417 init1: 417 opt: 417 Z-score: 411.0 bits: 83.7 E(): 3e-14 Smith-Waterman score: 417; 96.875% identity (98.438% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|448 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::.: :::: gi|448 SLCQKQLLILLSKVRLCGGRPTRQDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|18496379|dbj|BAB84565.1| FGF11 [Rattus norvegicus] (225 aa) initn: 417 init1: 417 opt: 417 Z-score: 410.2 bits: 83.7 E(): 3.3e-14 Smith-Waterman score: 417; 96.875% identity (98.438% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|184 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::.: :::: gi|184 SLCQKQLLILLSKVRLCGGRPTRQDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 >>gi|2494458|sp|P70378|FGF11_MOUSE Fibroblast growth fac (225 aa) initn: 417 init1: 417 opt: 417 Z-score: 410.2 bits: 83.7 E(): 3.3e-14 Smith-Waterman score: 417; 96.875% identity (98.438% similar) in 64 aa overlap (25-88:1-64) 10 20 30 40 50 60 fh2056 AGSSGGAQRAPGACRFGGVSSRGAMAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK :::::::::::::::::::::::::::::::::::: gi|249 MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTK 10 20 30 70 80 90 100 110 120 fh2056 SLCQKQLLILLSKVRLCGGRPARPDRGPGECGWGGVSRPEVSLPGRLRPGTLKNRARLRG :::::::::::::::::::::.: :::: gi|249 SLCQKQLLILLSKVRLCGGRPTRQDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPE 40 50 60 70 80 90 347 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 00:16:34 2008 done: Sun Aug 10 00:19:09 2008 Total Scan time: 779.770 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]