hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-00250978/chunk_1/iprscan-20080810-00250978.nocrc
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Query sequence: fh20774
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                      191.0    3.1e-56   2
PF00168.20.ls C2 domain                                      195.0    1.6e-55   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/2     220   313 ..     1    88 []    96.1  5.1e-28
PF00168.20.ls   1/2     220   313 ..     1    88 []    98.1  2.5e-26
PF00168.20.fs   2/2     357   445 ..     1    88 []    94.9  1.1e-27
PF00168.20.ls   2/2     357   445 ..     1    88 []    96.9  5.5e-26

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 2, from 220 to 313: score 96.1, E = 5.1e-28
                   *->LrVtvieAknLppkDk......kngksDPYVkvylggdkkdqkkkTk
                      L+V+vieA++Lpp  +++++++   +s+PYVk++l++d k + k+T 
     fh20774   220    LTVRVIEARDLPPPIShdgsrqDMAHSNPYVKICLLPDQK-NSKQTG 265  

                   vikktlNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-
                   v++kt  Pv++E +tFe+p+ + q++tL ++V D+d+f+r+ ++G+vs  
     fh20774   266 VKRKTQKPVFEERYTFEIPFLEAQRrTLLLTVVDFDKFSRHCVIGKVS   313  

                   *
                    
     fh20774     -   -    

PF00168.20.ls: domain 1 of 2, from 220 to 313: score 98.1, E = 2.5e-26
                   *->LrVtvieAknLppkDk......kngksDPYVkvylggdkkdqkkkTk
                      L+V+vieA++Lpp  +++++++   +s+PYVk++l++d k + k+T 
     fh20774   220    LTVRVIEARDLPPPIShdgsrqDMAHSNPYVKICLLPDQK-NSKQTG 265  

                   vikktlNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-
                   v++kt  Pv++E +tFe+p+ + q++tL ++V D+d+f+r+ ++G+vs  
     fh20774   266 VKRKTQKPVFEERYTFEIPFLEAQRrTLLLTVVDFDKFSRHCVIGKVS   313  

                   *
                    
     fh20774     -   -    

PF00168.20.fs: domain 2 of 2, from 357 to 445: score 94.9, E = 1.1e-27
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V vi+Ak L  +D ++  sDP+Vk++l    k  ++kkT+  ++t
     fh20774   357    LNVDVIRAKQLLQTD-VSQGSDPFVKIQLVHGLKLvKTKKTSFLRGT 402  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    +P +NE+F F vp ++l++ +L+++V+ +++++++df+G+++   
     fh20774   403 IDPFYNESFSFKVPQEELENaSLVFTVFGHNMKSSNDFIGRIV    445  

PF00168.20.ls: domain 2 of 2, from 357 to 445: score 96.9, E = 5.5e-26
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V vi+Ak L  +D ++  sDP+Vk++l    k  ++kkT+  ++t
     fh20774   357    LNVDVIRAKQLLQTD-VSQGSDPFVKIQLVHGLKLvKTKKTSFLRGT 402  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    +P +NE+F F vp ++l++ +L+++V+ +++++++df+G+++   
     fh20774   403 IDPFYNESFSFKVPQEELENaSLVFTVFGHNMKSSNDFIGRIV    445  

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