hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-00250978/chunk_1/iprscan-20080810-00250978.nocrc
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Query sequence: fh20774
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 155.7    4.8e-42   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     219   328 ..     1    92 []    79.1  5.4e-19
SM00239    2/2     356   471 ..     1    92 []    76.6  3.1e-18

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 219 to 328: score 79.1, E = 5.4e-19
                   *->tLtvkiisArnLp...............DPYVkvs.........kTk
                       Ltv++i+Ar+Lp++ ++++++ +  +++PYVk+   ++++++++T 
     fh20774   219    HLTVRVIEARDLPppishdgsrqdmahsNPYVKICllpdqknskQTG 265  

                   vvkktlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfi
                   v++kt     Pv++E    ++Fe+p  + ++++L ++V D+++ +++ +i
     fh20774   266 VKRKTQ---KPVFEE---RYTFEIPFleaqrRtLLLTVVDFdkfsrhCVI 309  

                   Grvtippnnahqhsadglihlsell.ggrh.kl<-*
                   G+v++p              l+e++   + +++   
     fh20774   310 GKVSVP--------------LCEVDlVKGGhWW    328  

SM00239: domain 2 of 2, from 356 to 471: score 76.6, E = 3.1e-18
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +L+v +i+A++L  ++ + ++DP+Vk++  ++ +  +++kT+  ++t
     fh20774   356    RLNVDVIRAKQLLqtdvsqgsDPFVKIQlvhglklvktkKTSFLRGT 402  

                   lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti
                        P++nE   +F F+vp ++ ++++L+++V+ ++ ++++dfiGr++i
     fh20774   403 I---DPFYNE---SFSFKVPQeelenAsLVFTVFGHnmkssnDFIGRIVI 446  

                   ppnnahqhsadg.lihlsell.ggrh.kl<-*
                   +++    +s +++ +h++++l+ +r+ ++   
     fh20774   447 GQY----SSGPSeTNHWRRMLnTHRTaVE    471  

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