hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-00315611/chunk_1/iprscan-20080810-00315611.nocrc
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Query sequence: fh20918
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00276                                                 219.1    3.8e-61   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00276      1/1     124   256 ..     1   138 []   219.1  3.8e-61

Alignments of top-scoring domains:
SM00276: domain 1 of 1, from 124 to 256: score 219.1, E = 3.8e-61
                   *->vPykstlpgglkpGqtltvkGivtpdanqkrFsiNLltgengdiaLH
                      vPy+++lpgg+ p++ +t+ G+v+p+a  +r++++++ g  +d+a+H
     fh20918   124    VPYNLPLPGGVVPRMLITILGTVKPNA--NRIALDFQRG--NDVAFH 166  

                   fNpRFdehgdvgtvVcNSlensGsWGsEeReggfPFqkGqeFdltIivqp
                   fNpRF+e ++++++VcN++++ ++WG+EeR ++fPF++G++F +++ v+p
     fh20918   167 FNPRFNE-NNRRVIVCNTKLD-NNWGREERQSVFPFESGKPFKIQVLVEP 214  

                   dkFqIfvNgghfaeFpHRlples.idylsinGDvqltsvsle<-*
                   d+F+++vN++h+++++HR++ +++i  l+i+GD+ lts s++   
     fh20918   215 DHFKVAVNDAHLLQYNHRVKKLNeISKLGISGDIDLTSASYT    256  

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