hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-00383071/chunk_1/iprscan-20080810-00383071.nocrc
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Query sequence: fh21177
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF02310.9.fs B12 binding domain                           98.8    8.7e-28   1
PF02310.9.ls B12 binding domain                          100.6    4.3e-27   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02310.9.fs   1/1      62   182 ..     1   142 []    98.8  8.7e-28
PF02310.9.ls   1/1      62   182 ..     1   142 []   100.6  4.3e-27

Alignments of top-scoring domains:
PF02310.9.fs: domain 1 of 1, from 62 to 182: score 98.8, E = 8.7e-28
                   *->grvvlakvggdgHdiGknvvaaaLrdaGiafevrVvdlGarplhldv
                      +r ++ak+g dgHd+G++v+a+ + d G  f+  V d+G     l++
     fh21177    62    PRLLVAKMGQDGHDRGAKVIATGFADLG--FD--V-DIG----PLFQ 99   

                   ppediveaakeekdpDkvvvglgSalsgahlelvkelaelLkeagknirp
                   +p ++++ a++  d++  +vg+ S l + h +lv+el+++L  +g   rp
     fh21177   100 TPREVAQQAVDA-DVH--AVGI-STLAAGHKTLVPELIKELNSLG---RP 142  

                   dvpvvvGGaavhptfdpeelLkeeggaDavvvGegeeavkelvea<-*
                   d++v++GG  v+p++d+e+l   e g+  v+ G+g +  k+ v+    
     fh21177   143 DILVMCGG--VIPPQDYEFL--FEVGVSNVF-GPGTRIPKAAVQV    182  

PF02310.9.ls: domain 1 of 1, from 62 to 182: score 100.6, E = 4.3e-27
                   *->grvvlakvggdgHdiGknvvaaaLrdaGiafevrVvdlGarplhldv
                      +r ++ak+g dgHd+G++v+a+ + d G  f+  V d+G     l++
     fh21177    62    PRLLVAKMGQDGHDRGAKVIATGFADLG--FD--V-DIG----PLFQ 99   

                   ppediveaakeekdpDkvvvglgSalsgahlelvkelaelLkeagknirp
                   +p ++++ a++  d++  +vg+ S l + h +lv+el+++L  +g   rp
     fh21177   100 TPREVAQQAVDA-DVH--AVGI-STLAAGHKTLVPELIKELNSLG---RP 142  

                   dvpvvvGGaavhptfdpeelLkeeggaDavvvGegeeavkelvea<-*
                   d++v++GG  v+p++d+e+l   e g+  v+ G+g +  k+ v+    
     fh21177   143 DILVMCGG--VIPPQDYEFL--FEVGVSNVF-GPGTRIPKAAVQV    182  

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