hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-00453136/chunk_1/iprscan-20080810-00453136.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh21196
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04968.3.fs CHORD                                          158.3    6.6e-53   1
PF04968.3.ls CHORD                                          160.3    4.6e-45   1
PF04969.6.fs CS domain                                       91.6    2.5e-26   1
PF04969.6.ls CS domain                                       93.5    5.9e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04968.3.fs   1/1      17    81 ..     1    65 []   158.3  6.6e-53
PF04968.3.ls   1/1      17    81 ..     1    65 []   160.3  4.6e-45
PF04969.6.fs   1/1      94   170 ..     1    83 []    91.6  2.5e-26
PF04969.6.ls   1/1      94   170 ..     1    83 []    93.5  5.9e-25

Alignments of top-scoring domains:
PF04968.3.fs: domain 1 of 1, from 17 to 81: score 158.3, E = 6.6e-53
                   *->mglkCkNkGCgkeFdgneNdegaCtYHPGvPiFHDgmKgWSCCdkkt
                      +g++CkN GC+k+++g e++e++C+YH+GvPiFH+gmK+WSCC++kt
     fh21196    17    IGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKT 63   

                   sDFseFLaikGCttGkHt<-*
                   sDF++FLa++GCt+GkH    
     fh21196    64 SDFNTFLAQEGCTKGKHM    81   

PF04968.3.ls: domain 1 of 1, from 17 to 81: score 160.3, E = 4.6e-45
                   *->mglkCkNkGCgkeFdgneNdegaCtYHPGvPiFHDgmKgWSCCdkkt
                      +g++CkN GC+k+++g e++e++C+YH+GvPiFH+gmK+WSCC++kt
     fh21196    17    IGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKT 63   

                   sDFseFLaikGCttGkHt<-*
                   sDF++FLa++GCt+GkH    
     fh21196    64 SDFNTFLAQEGCTKGKHM    81   

PF04969.6.fs: domain 1 of 1, from 94 to 170: score 91.6, E = 2.5e-26
                   *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg
                      +r+dW+Qt  eVti++++k++    ++   Ve +++ l v+i+++g+
     fh21196    94    CRHDWHQTGGEVTISVYAKNS---LPELSRVEANSTLLNVHIVFEGE 137  

                   dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-*
                    k++  +++ L+g Id+  S+++++ t k+eIt++K   
     fh21196   138 -KEFDQNVK-LWGVIDVKRSYVTMTAT-KIEITMRK    170  

PF04969.6.ls: domain 1 of 1, from 94 to 170: score 93.5, E = 5.9e-25
                   *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg
                      +r+dW+Qt  eVti++++k++    ++   Ve +++ l v+i+++g+
     fh21196    94    CRHDWHQTGGEVTISVYAKNS---LPELSRVEANSTLLNVHIVFEGE 137  

                   dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-*
                    k++  +++ L+g Id+  S+++++ t k+eIt++K   
     fh21196   138 -KEFDQNVK-LWGVIDVKRSYVTMTAT-KIEITMRK    170  

//