hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-01104408/chunk_1/iprscan-20080810-01104408.nocrc
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Query sequence: fh21874
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  78.9    6.1e-19   1
SM00219                                                -106.4    0.00015   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      37   278 ..     1   280 []  -106.4  0.00015
SM00220    1/1      37   296 ..     1   231 []    78.9  6.1e-19

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 37 to 278: score -106.4, E = 0.00015
                   *->ltlgkkLGeGaFGeVykG..tlk.ieVAVKtLkeda.keeFlrEaki
                       + ++k+G G FGe+y + ++l++++VA K+  +  +k+ +  E  +
     fh21874    37    WKVLRKIGGGGFGEIYDAldMLTrENVALKVESAQQpKQVLKMEVAV 83   

                   MkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrkn
                   +kkl    +++ +++G+ + +          ++vm +  g +L d  r+ 
     fh21874    84 LKKL-QGKDHVCRFIGCGRND-------RFNYVVMQL-QGRNLADLRRSQ 124  

                   rpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk....v
                    + +++ s+ l    QI +  e ++s +f HRD+   N   g+  ++ + 
     fh21874   125 SRGtFTISTTLRLGRQILESIESIHSVGFLHRDIKPSNFAMGRFPstcrK 174  

                   vKIsDFGLsRdlyddDkkG.eskdyYrkkggkggktllPirWmAPEslkd
                   +   DFGL+R  ++   +G+++    ++    g +    +r  ++ + + 
     fh21874   175 CYMLDFGLARQFTNS--CGdVRPPRAVA----GFR--GTVRYASINAHRN 216  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   ++     D WS       +f    +   g+    ++++ +  + + G   
     fh21874   217 REMGRHDDLWS-------LFYMLVEFVVGQ----LPWRKIKDKEQVGSIK 255  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   ++ ++              +lMl+           Fs   + +   
     fh21874   256 ERYDH--------------RLMLKHLPP------EFSIFLDHI    278  

SM00220: domain 1 of 1, from 37 to 296: score 78.9, E = 6.1e-19
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.....erilrEiki
                      +++l+k+G G+FG+ y a d  t + vA+Kv + +++++ ++ E+++
     fh21874    37    WKVLRKIGGGGFGEIYDALDMLTRENVALKVESaqqpkQVLKMEVAV 83   

                   Lkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr
                   Lkk ++ +++++++++ +++ + y+Vm + +    +L dl +++ r+   
     fh21874    84 LKKlqGKDHVCRFIGCGRNdRFNYVVMQLQGR---NLADLRRSQSRGT-- 128  

                   kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......hvK
                     ++ +++ ++ rQil+ +e +Hs g++HRD+KP+N  + + +++ +   
     fh21874   129 --FTIsTTLRLGRQILESIESIHSVGFLHRDIKPSNFAMGRfpstcrKCY 176  

                   laDFGlArql.............ttfvGTpeYmAPEvl...gYgkpavDi
                     DFGlArq++++ ++ ++++    f GT  Y +    +++  g+   D 
     fh21874   177 MLDFGLARQFtnscgdvrppravAGFRGTVRYASINAHrnrEMGR-HDDL 225  

                   WSlGcilyElltGkpPFp..qldlifkkig............SpeakdLi
                   WSl  +l E+++G+ P+++  +++    i+++++++   ++ +pe+  ++
     fh21874   226 WSLFYMLVEFVVGQLPWRkiKDKEQVGSIKerydhrlmlkhlPPEFSIFL 275  

                   kklLvkdPekRlta.eaLedeldikaHPff<-*
                   +++   d       +  L           f   
     fh21874   276 DHISSLDYF--TKPdYQLL-------TSVF    296  

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