hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-14400156/chunk_1/iprscan-20090416-14400156.nocrc
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Query sequence: fh21930
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03357.11.fs Snf7                                            55.3    2.7e-15   1
PF03357.11.ls Snf7                                            57.2    5.1e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03357.11.fs   1/1      41   211 ..     1   199 []    55.3  2.7e-15
PF03357.11.ls   1/1      41   211 ..     1   199 []    57.2  5.1e-14

Alignments of top-scoring domains:
PF03357.11.fs: domain 1 of 1, from 41 to 211: score 55.3, E = 2.7e-15
                   *->eailsLrkaireLdkkqeslekkikkleaelkkkakkgnKmReGPak
                      ++  +L+ + ++L+k  ++ ek  k ++a+ kk++ ++n        
     fh21930    41    DTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKN-------- 79   

                   nalKdaAlilLKqkkryEkqldqldgqlanleqqrmaienaktnmevlna
                       + A++++   +r  ++  +   + ++++++++++++a t++ v+  
     fh21930    80 ---VECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKN 126  

                   MkggakaMKamnkkmdiDkiddlMdeiedqmekadEIsEalsdplddald
                   M++++ka+ ++ + md++k+   Md +e q+   d    +++d++ +a +
     fh21930   127 MAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATT 176  

                   deeDEeEldaELdaLedEigdeellsalpelpsaepsylmaveLPsvPse
                       +e +d +  ++++E+g+e                   ++L+++P++
     fh21930   177 LTTPQEQVDSLIMQIAEENGLEV-----------------LDQLSQLPEG 209  

                   el<-*
                   ++   
     fh21930   210 AS    211  

PF03357.11.ls: domain 1 of 1, from 41 to 211: score 57.2, E = 5.1e-14
                   *->eailsLrkaireLdkkqeslekkikkleaelkkkakkgnKmReGPak
                      ++  +L+ + ++L+k  ++ ek  k ++a+ kk++ ++n        
     fh21930    41    DTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKN-------- 79   

                   nalKdaAlilLKqkkryEkqldqldgqlanleqqrmaienaktnmevlna
                       + A++++   +r  ++  +   + ++++++++++++a t++ v+  
     fh21930    80 ---VECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKN 126  

                   MkggakaMKamnkkmdiDkiddlMdeiedqmekadEIsEalsdplddald
                   M++++ka+ ++ + md++k+   Md +e q+   d    +++d++ +a +
     fh21930   127 MAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATT 176  

                   deeDEeEldaELdaLedEigdeellsalpelpsaepsylmaveLPsvPse
                       +e +d +  ++++E+g+e                   ++L+++P++
     fh21930   177 LTTPQEQVDSLIMQIAEENGLEV-----------------LDQLSQLPEG 209  

                   el<-*
                   ++   
     fh21930   210 AS    211  

//