hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-01291917/chunk_1/iprscan-20080810-01291917.nocrc
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Query sequence: fh21969
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03451.5.ls HELP motif                                     180.1    5.1e-51   1
PF03451.5.fs HELP motif                                     178.1      1e-50   1
PF00400.22.ls WD domain, G-beta repeat                       117.3    4.2e-32   7
PF00400.22.fs WD domain, G-beta repeat                       115.5    1.4e-31   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03451.5.ls   1/1     259   334 ..     1    78 []   180.1  5.1e-51
PF03451.5.fs   1/1     259   334 ..     1    78 []   178.1    1e-50
PF00400.22.fs   1/7     335   363 ..     1    28 [.    15.4   0.0023
PF00400.22.fs   3/7     535   573 ..     1    38 []    14.9   0.0031
PF00400.22.ls   4/7     618   656 ..     1    38 []    23.9  0.00053
PF00400.22.fs   4/7     618   656 ..     1    38 []    21.9  3.3e-05
PF00400.22.ls   6/7     747   785 ..     1    38 []    28.6    2e-05
PF00400.22.fs   6/7     747   785 ..     1    38 []    26.6  1.5e-06
PF00400.22.ls   7/7     860   899 ..     1    38 []    25.3   0.0002
PF00400.22.fs   7/7     860   899 ..     1    38 []    23.3  1.4e-05

Alignments of top-scoring domains:
PF03451.5.ls: domain 1 of 1, from 259 to 334: score 180.1, E = 5.1e-51
                   *->eeGevkmflRGrpvtmyiPsdlvenydleadkdlPdkklkLewVYGY
                      e++++kmf+RGrp+tm+iPsd v+nyd +++++lP++klkLew+YGY
     fh21969   259    EGEYIKMFMRGRPITMFIPSD-VDNYD-DIRTELPPEKLKLEWAYGY 303  

                   RGkDcRaNlylLPtGEivYFvAavvVLynve<-*
                   RGkDcRaN+ylLPtGEivYF+A+vvVL+n+e   
     fh21969   304 RGKDCRANVYLLPTGEIVYFIASVVVLFNYE    334  

PF03451.5.fs: domain 1 of 1, from 259 to 334: score 178.1, E = 1e-50
                   *->eeGevkmflRGrpvtmyiPsdlvenydleadkdlPdkklkLewVYGY
                      e++++kmf+RGrp+tm+iPsd v+nyd +++++lP++klkLew+YGY
     fh21969   259    EGEYIKMFMRGRPITMFIPSD-VDNYD-DIRTELPPEKLKLEWAYGY 303  

                   RGkDcRaNlylLPtGEivYFvAavvVLynve<-*
                   RGkDcRaN+ylLPtGEivYF+A+vvVL+n+e   
     fh21969   304 RGKDCRANVYLLPTGEIVYFIASVVVLFNYE    334  

PF00400.22.fs: domain 1 of 7, from 335 to 363: score 15.4, E = 0.0023
                   *->geck.vl.gHtstVtcvafspdsgpllasg<-*
                         ++++ gHt+ V c+a++pd   ++a+g   
     fh21969   335    ERTQrHYlGHTDCVKCLAIHPD-KIRIATG    363  

PF00400.22.fs: domain 3 of 7, from 535 to 573: score 14.9, E = 0.0031
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  + +++H ++V  ++   + g ll  g+ D++i +Wd   
     fh21969   535    YQISkQIkAHDGSVFTLCQMRN-GMLLTGGGKDRKIILWD    573  

PF00400.22.ls: domain 4 of 7, from 618 to 656: score 23.9, E = 0.00053
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         + + +gHt+  + +a +p    ll+++  D+ +++W+   
     fh21969   618    DGFQiEVqGHTDELWGLATHPF-KDLLLTCAQDRQVCLWN    656  

PF00400.22.fs: domain 4 of 7, from 618 to 656: score 21.9, E = 3.3e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         + + +gHt+  + +a +p    ll+++  D+ +++W+   
     fh21969   618    DGFQiEVqGHTDELWGLATHPF-KDLLLTCAQDRQVCLWN    656  

PF00400.22.ls: domain 6 of 7, from 747 to 785: score 28.6, E = 2e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          +  +gH+s +t +++spd  +++ s S D  i  Wd   
     fh21969   747    YSRYgRCtGHSSYITHLDWSPD-NKYIMSNSGDYEILYWD    785  

PF00400.22.fs: domain 6 of 7, from 747 to 785: score 26.6, E = 1.5e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          +  +gH+s +t +++spd  +++ s S D  i  Wd   
     fh21969   747    YSRYgRCtGHSSYITHLDWSPD-NKYIMSNSGDYEILYWD    785  

PF00400.22.ls: domain 7 of 7, from 860 to 899: score 25.3, E = 0.0002
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + + +++H+s Vt v+f +++++l+ +g+ D +i  W+   
     fh21969   860    KAPShKYsAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWK    899  

PF00400.22.fs: domain 7 of 7, from 860 to 899: score 23.3, E = 1.4e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + + +++H+s Vt v+f +++++l+ +g+ D +i  W+   
     fh21969   860    KAPShKYsAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWK    899  

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