hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-02003744/chunk_1/iprscan-20080810-02003744.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh22627 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01266.14.ls FAD dependent oxidoreductase 241.6 1.5e-69 1 PF01266.14.fs FAD dependent oxidoreductase 239.8 5.4e-69 1 PF00036.22.ls EF hand 48.9 1.5e-11 2 PF00036.22.fs EF hand 44.9 3.3e-11 2 PF00890.14.fs FAD binding domain 17.9 2.9e-05 1 PF07992.4.fs Pyridine nucleotide-disulphide oxidored 16.4 0.00041 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01266.14.fs 1/1 72 442 .. 1 402 [] 239.8 5.4e-69 PF00890.14.fs 1/1 72 109 .. 1 41 [. 17.9 2.9e-05 PF07992.4.fs 1/1 72 103 .. 1 38 [. 16.4 0.00041 PF01266.14.ls 1/1 72 442 .. 1 402 [] 241.6 1.5e-69 PF00036.22.fs 1/2 628 656 .. 1 29 [] 16.9 0.0015 PF00036.22.ls 2/2 664 692 .. 1 29 [] 30.0 7.5e-06 PF00036.22.fs 2/2 664 692 .. 1 29 [] 28.1 1.3e-06 Alignments of top-scoring domains: PF01266.14.fs: domain 1 of 1, from 72 to 442: score 239.8, E = 5.4e-69 *->DVvVIGGGivGlstAyhLakrGlsVtllErgdigsGaSgrnaGlihp D++VIGGG +G+++A+++ rGl+++l+Er+d+ sG+S+r+++lih+ fh22627 72 DILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHG 118 glryleqg.rWl.l.ld.lvreagkerallarla.esrdllreleleelg g+ryl ++ l+ ++ ++v+ea++era l+++a++ ++l+ + l+ fh22627 119 GVRYLQKAiMKLdIeQYrMVKEALHERANLLEIApHLSAPLPIM----LP 164 idcdfrrtGglylardeaeld.lerlaaalralGlpedvelLdaeelrel +++++ ++++++ + +l + l+ +++L++++++e+ fh22627 165 -VYKWWQLPYYWVGIKLYDLVaG--------SNCLK-SSYVLSKSRALEH 204 ePgls.pglvgalfypddghvdParlvraLaraAealGveilegteVtgl +P+l +++lvga++y+d+ ++ar+ +a a A++ G+ ++ eV++l fh22627 205 FPMLQkDKLVGAIVYYDGQ-HNDARMNLAIALTAARYGAATANYMEVVSL 253 ereggg.....rvv.VeTedGeirA.f.i.AdkVVnAaGawsdelarllg ++ + ++++ +v+++++ d ++ +f+++A++V+nA+G+++d ++++++ fh22627 254 LKKTDPqtgkvHVSgARCKDVLTGQeFdVrAKCVINATGPFTDSVRKMDD 303 l.l.prIvPYfLkplrdiplrPvrGqvlvteplpealapallppdeavgd + +P G+++v + + ++ll p +++g fh22627 304 KdAaA-------------ICQPSAGVHIVMPGYYSPESMGLLDPATSDG- 339 srgvyiipreGgvliGattdgrldfgggpeevsg.didvdlarleeller r+++++p++ +++G ttd++ d p + ++di + l +++ fh22627 340 -RVIFFLPWQKMTIAG-TTDTPTDVTHHPIPS-EeDINFIL----NEVRN 382 arrlfPqLadadilrawaGlRplt............pDglPiigtpDtsk ++ + ++++ d+l aw+G+Rpl +++++ ++++ +++++ fh22627 383 YLSCDVEVRRGDVLAAWSGIRPLVtdpksadtqsisRNHV---------- 422 PviGrvpglpglyvatGhgghGltlapaiGkllAel<-* i+++ g +++ a+Gk+++++ fh22627 423 VDISES------------G----LITIAGGKWTTYR 442 PF00890.14.fs: domain 1 of 1, from 72 to 109: score 17.9, E = 2.9e-05 *->DVvViGsGlAGLaAAleaAeaGlkkVavvekgqpfggGGht<-* D++ViG+G+ G +Al a +Gl k+a+ve + +g ++ fh22627 72 DILVIGGGATGSGCALDAVTRGL-KTALVERDDFSSG--TS 109 PF07992.4.fs: domain 1 of 1, from 72 to 103: score 16.4, E = 0.00041 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEEkek<-* d+++IGgG+ G +A+ + + glk+al+ E+++ fh22627 72 DILVIGGGATGSGCALDAVTR----GLKTALV--ERDD 103 PF01266.14.ls: domain 1 of 1, from 72 to 442: score 241.6, E = 1.5e-69 *->DVvVIGGGivGlstAyhLakrGlsVtllErgdigsGaSgrnaGlihp D++VIGGG +G+++A+++ rGl+++l+Er+d+ sG+S+r+++lih+ fh22627 72 DILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHG 118 glryleqg.rWl.l.ld.lvreagkerallarla.esrdllreleleelg g+ryl ++ l+ ++ ++v+ea++era l+++a++ ++l+ + l+ fh22627 119 GVRYLQKAiMKLdIeQYrMVKEALHERANLLEIApHLSAPLPIM----LP 164 idcdfrrtGglylardeaeld.lerlaaalralGlpedvelLdaeelrel +++++ ++++++ + +l + l+ +++L++++++e+ fh22627 165 -VYKWWQLPYYWVGIKLYDLVaG--------SNCLK-SSYVLSKSRALEH 204 ePgls.pglvgalfypddghvdParlvraLaraAealGveilegteVtgl +P+l +++lvga++y+d+ ++ar+ +a a A++ G+ ++ eV++l fh22627 205 FPMLQkDKLVGAIVYYDGQ-HNDARMNLAIALTAARYGAATANYMEVVSL 253 ereggg.....rvv.VeTedGeirA.f.i.AdkVVnAaGawsdelarllg ++ + ++++ +v+++++ d ++ +f+++A++V+nA+G+++d ++++++ fh22627 254 LKKTDPqtgkvHVSgARCKDVLTGQeFdVrAKCVINATGPFTDSVRKMDD 303 l.l.prIvPYfLkplrdiplrPvrGqvlvteplpealapallppdeavgd + +P G+++v + + ++ll p +++g fh22627 304 KdAaA-------------ICQPSAGVHIVMPGYYSPESMGLLDPATSDG- 339 srgvyiipreGgvliGattdgrldfgggpeevsg.didvdlarleeller r+++++p++ +++G ttd++ d p + ++di + l +++ fh22627 340 -RVIFFLPWQKMTIAG-TTDTPTDVTHHPIPS-EeDINFIL----NEVRN 382 arrlfPqLadadilrawaGlRplt............pDglPiigtpDtsk ++ + ++++ d+l aw+G+Rpl +++++ ++++ +++++ fh22627 383 YLSCDVEVRRGDVLAAWSGIRPLVtdpksadtqsisRNHV---------- 422 PviGrvpglpglyvatGhgghGltlapaiGkllAel<-* i+++ g +++ a+Gk+++++ fh22627 423 VDISES------------G----LITIAGGKWTTYR 442 PF00036.22.fs: domain 1 of 2, from 628 to 656: score 16.9, E = 0.0015 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + k+ F +fD+D+ G+I++ + +++l+++ fh22627 628 RYKKRFHKFDADQKGFITIVDVQRVLESI 656 PF00036.22.ls: domain 2 of 2, from 664 to 692: score 30.0, E = 7.5e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* l e+ +e+D +++G+++++Ef+++++++ fh22627 664 TLHEILNEVDLNKNGQVELNEFLQLMSAI 692 PF00036.22.fs: domain 2 of 2, from 664 to 692: score 28.1, E = 1.3e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* l e+ +e+D +++G+++++Ef+++++++ fh22627 664 TLHEILNEVDLNKNGQVELNEFLQLMSAI 692 //