hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-02070890/chunk_1/iprscan-20080810-02070890.nocrc
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Query sequence: fh22665
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  184.9      3e-54   1
PF00620.17.ls RhoGAP domain                                  186.8    4.9e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00620.17.fs   1/1      49   200 ..     1   155 []   184.9    3e-54
PF00620.17.ls   1/1      49   200 ..     1   155 []   186.8  4.9e-53

Alignments of top-scoring domains:
PF00620.17.fs: domain 1 of 1, from 49 to 200: score 184.9, E = 3e-54
                   *->PlivekCieflekrG.LdtEGIyRvsGsksrikeLreafdrgedvdl
                      P+iv++ ++++e++G+L+++G+++v+G++ ++++Lr+++d+ge+vd 
     fh22665    49    PFIVRHVVDYIEEHGgLEQQGLFQVNGNAETVEWLRQRYDSGEEVD- 94   

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefi.eaaaksedeeerl
                    +++e dv+++ slL  FL eLPeP+++ +l+ +++++  ++ ++e+e  
     fh22665    95 -LVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMqL-SQDYNNEDEFG 142  

                   ealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL
                   ++lr ll++LPp+N+++L++L+++L++Va+++e    +a++LA vFgP  
     fh22665   143 RKLRFLLQQLPPVNYSLLKFLCRFLANVASHHE-EIWSANSLAAVFGPDV 191  

                   lrppdgdsad<-*
                   ++   +   d   
     fh22665   192 FHIYTD-VED    200  

PF00620.17.ls: domain 1 of 1, from 49 to 200: score 186.8, E = 4.9e-53
                   *->PlivekCieflekrG.LdtEGIyRvsGsksrikeLreafdrgedvdl
                      P+iv++ ++++e++G+L+++G+++v+G++ ++++Lr+++d+ge+vd 
     fh22665    49    PFIVRHVVDYIEEHGgLEQQGLFQVNGNAETVEWLRQRYDSGEEVD- 94   

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefi.eaaaksedeeerl
                    +++e dv+++ slL  FL eLPeP+++ +l+ +++++  ++ ++e+e  
     fh22665    95 -LVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMqL-SQDYNNEDEFG 142  

                   ealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL
                   ++lr ll++LPp+N+++L++L+++L++Va+++e    +a++LA vFgP  
     fh22665   143 RKLRFLLQQLPPVNYSLLKFLCRFLANVASHHE-EIWSANSLAAVFGPDV 191  

                   lrppdgdsad<-*
                   ++   +   d   
     fh22665   192 FHIYTD-VED    200  

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