hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09012724/chunk_1/iprscan-20090618-09012724.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh22735 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID) 168.4 2.9e-49 1 PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID) 170.2 4.7e-48 1 PF00536.20.fs SAM domain (Sterile alpha motif) 154.0 1e-44 2 PF00536.20.ls SAM domain (Sterile alpha motif) 158.0 2.3e-44 2 PF07647.7.fs SAM domain (Sterile alpha motif) 96.2 1.4e-27 2 PF07647.7.ls SAM domain (Sterile alpha motif) 99.3 1.1e-26 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.ls 1/2 32 101 .. 1 72 [] 55.0 2.3e-13 PF07647.7.fs 1/2 32 98 .. 1 69 [. 53.9 3.7e-15 PF00536.20.fs 1/2 33 99 .. 1 65 [] 77.0 4.9e-22 PF00536.20.ls 1/2 33 99 .. 1 65 [] 79.0 1.4e-20 PF07647.7.ls 2/2 106 174 .. 1 72 [] 44.3 3.8e-10 PF07647.7.fs 2/2 106 174 .. 1 72 [] 42.3 9.3e-12 PF00536.20.fs 2/2 107 172 .. 1 65 [] 77.0 4.8e-22 PF00536.20.ls 2/2 107 172 .. 1 65 [] 79.0 1.4e-20 PF00640.13.fs 1/1 227 357 .. 1 165 [] 168.4 2.9e-49 PF00640.13.ls 1/1 227 357 .. 1 165 [] 170.2 4.7e-48 Alignments of top-scoring domains: PF07647.7.ls: domain 1 of 2, from 32 to 101: score 55.0, E = 2.3e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL + + +++v++WLesigl +qY+ ++++g++ + + + ++ +dL fh22735 32 GPRCPVQTVGQWLESIGL-PQYENHLMANGFDNVQFMGsNVMEDQDL 77 aklalGitsvghRkkilkkiqelkqq<-* + ++Gi + ghR++il++iq l fh22735 78 -L-EIGILNSGHRQRILQAIQLLPKM 101 PF07647.7.fs: domain 1 of 2, from 32 to 98: score 53.9, E = 3.7e-15 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL + + +++v++WLesigl +qY+ ++++g++ + + + ++ +dL fh22735 32 GPRCPVQTVGQWLESIGL-PQYENHLMANGFDNVQFMGsNVMEDQDL 77 aklalGitsvghRkkilkkiqel<-* + ++Gi + ghR++il++iq l fh22735 78 -L-EIGILNSGHRQRILQAIQLL 98 PF00536.20.fs: domain 1 of 2, from 33 to 99: score 77.0, E = 4.9e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeD..Led + ++++Vg+WLesigl+qY+++ +++g+++++ + +eD++L++ fh22735 33 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDqdLLE 79 lGvtllGHrkKIlssIqgLk<-* +G+ + GHr++Il++Iq L fh22735 80 IGILNSGHRQRILQAIQLLP 99 PF00536.20.ls: domain 1 of 2, from 33 to 99: score 79.0, E = 1.4e-20 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeD..Led + ++++Vg+WLesigl+qY+++ +++g+++++ + +eD++L++ fh22735 33 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDqdLLE 79 lGvtllGHrkKIlssIqgLk<-* +G+ + GHr++Il++Iq L fh22735 80 IGILNSGHRQRILQAIQLLP 99 PF07647.7.ls: domain 2 of 2, from 106 to 174: score 44.3, E = 3.8e-10 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + + svaeWL+si l g+Y+ +F+ +g+t+++ll +++ e +L fh22735 106 HDGYHPTSVAEWLDSIEL-GDYTKAFLINGYTSMDLL-KKIWEVEL- 149 klalGitsvghRkkilkkiqelkqq<-* ++ l+i++ ghRk+il ++ + ++ fh22735 150 INVLKINLIGHRKRILASLGDRLHD 174 PF07647.7.fs: domain 2 of 2, from 106 to 174: score 42.3, E = 9.3e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + + svaeWL+si l g+Y+ +F+ +g+t+++ll +++ e +L fh22735 106 HDGYHPTSVAEWLDSIEL-GDYTKAFLINGYTSMDLL-KKIWEVEL- 149 klalGitsvghRkkilkkiqelkqq<-* ++ l+i++ ghRk+il ++ + ++ fh22735 150 INVLKINLIGHRKRILASLGDRLHD 174 PF00536.20.fs: domain 2 of 2, from 107 to 172: score 77.0, E = 4.8e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l dg ++ sV+eWL+si lg Y+++Fl +gy+++d l ++e +L + l fh22735 107 DGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINvL 153 GvtllGHrkKIlssIqgLk<-* +++l+GHrk+Il s+ + fh22735 154 KINLIGHRKRILASLGDRL 172 PF00536.20.ls: domain 2 of 2, from 107 to 172: score 79.0, E = 1.4e-20 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l dg ++ sV+eWL+si lg Y+++Fl +gy+++d l ++e +L + l fh22735 107 DGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINvL 153 GvtllGHrkKIlssIqgLk<-* +++l+GHrk+Il s+ + fh22735 154 KINLIGHRKRILASLGDRL 172 PF00640.13.fs: domain 1 of 1, from 227 to 357: score 168.4, E = 2.9e-49 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk +++ YLGs+ ++e ++ ++ +++A ++km+ fh22735 227 YKAFYLGSMLIKELRG-------TESTQDA--CAKMR---------- 254 ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF + ++s++++++ +i+Ls+s++g+k++d+ + k+++++h++r+IS+ fh22735 255 -ANCQKSTEQMKKVPTIILSVSYKGVKFIDATN---KNIIAEHEIRNISC 300 iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi +a+ Dp+ dl tFay i++d ++++++CHvF++ + ++lA++i fh22735 301 AAQ--DPE-DLSTFAY-------ITKDLKSNHHYCHVFTAFD-VNLAYEI 339 aqavGqAFevaYqeflra<-* ++++GqAFevaYq+ l+a fh22735 340 ILTLGQAFEVAYQLALQA 357 PF00640.13.ls: domain 1 of 1, from 227 to 357: score 170.2, E = 4.7e-48 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk +++ YLGs+ ++e ++ ++ +++A ++km+ fh22735 227 YKAFYLGSMLIKELRG-------TESTQDA--CAKMR---------- 254 ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF + ++s++++++ +i+Ls+s++g+k++d+ + k+++++h++r+IS+ fh22735 255 -ANCQKSTEQMKKVPTIILSVSYKGVKFIDATN---KNIIAEHEIRNISC 300 iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi +a+ Dp+ dl tFay i++d ++++++CHvF++ + ++lA++i fh22735 301 AAQ--DPE-DLSTFAY-------ITKDLKSNHHYCHVFTAFD-VNLAYEI 339 aqavGqAFevaYqeflra<-* ++++GqAFevaYq+ l+a fh22735 340 ILTLGQAFEVAYQLALQA 357 //