hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-02152462/chunk_1/iprscan-20080810-02152462.nocrc
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Query sequence: fh22923
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain             76.4    8.5e-20   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             74.4    2.4e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1     249   301 ..     1    53 []    74.4  2.4e-19
PF00010.16.ls   1/1     249   301 ..     1    53 []    76.4  8.5e-20

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 249 to 301: score 74.4, E = 2.4e-19
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR  +narER R++ i  afe+Lr+ +P+ ++++KlsK++iLr A++
     fh22923   249    RRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACN 295  

                   YIksLq<-*
                   YI sL    
     fh22923   296 YILSLA    301  

PF00010.16.ls: domain 1 of 1, from 249 to 301: score 76.4, E = 8.5e-20
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      rR  +narER R++ i  afe+Lr+ +P+ ++++KlsK++iLr A++
     fh22923   249    RRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACN 295  

                   YIksLq<-*
                   YI sL    
     fh22923   296 YILSLA    301  

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