hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-02215266/chunk_1/iprscan-20080810-02215266.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh23011 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 176.2 1.3e-51 1 PF02373.13.ls JmjC domain 178.1 2.1e-50 1 PF00515.18.fs Tetratricopeptide repeat 122.7 6.5e-34 8 PF00515.18.ls Tetratricopeptide repeat 114.0 4e-31 6 PF07719.7.fs Tetratricopeptide repeat 94.9 1.5e-25 8 PF07719.7.ls Tetratricopeptide repeat 95.0 2.1e-25 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.fs 1/8 98 131 .. 1 34 [] 14.7 0.0035 PF00515.18.ls 1/6 98 131 .. 1 34 [] 16.7 0.05 PF07719.7.ls 2/7 135 168 .. 1 34 [] 24.4 0.00036 PF00515.18.ls 2/6 135 168 .. 1 34 [] 31.3 3.1e-06 PF00515.18.fs 2/8 135 168 .. 1 34 [] 29.3 2.5e-07 PF00515.18.ls 3/6 210 243 .. 1 34 [] 10.4 0.28 PF00515.18.fs 4/8 210 238 .. 1 29 [. 11.0 0.039 PF00515.18.fs 5/8 274 288 .. 20 34 .] 8.4 0.22 PF00515.18.ls 4/6 289 322 .. 1 34 [] 12.9 0.14 PF00515.18.fs 6/8 289 322 .. 1 34 [] 10.9 0.041 PF00515.18.ls 5/6 323 356 .. 1 34 [] 28.5 2.1e-05 PF00515.18.fs 7/8 323 356 .. 1 34 [] 26.5 1.5e-06 PF00515.18.ls 6/6 357 390 .. 1 34 [] 14.0 0.1 PF00515.18.fs 8/8 357 383 .. 1 27 [. 19.4 0.00016 PF02373.13.fs 1/1 1138 1246 .. 1 126 [] 176.2 1.3e-51 PF02373.13.ls 1/1 1138 1246 .. 1 126 [] 178.1 2.1e-50 Alignments of top-scoring domains: PF00515.18.fs: domain 1 of 8, from 98 to 131: score 14.7, E = 0.0035 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ +++lG+ l l++y +A+ ay++ +l+ ++ fh23011 98 SDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDY 131 PF00515.18.ls: domain 1 of 6, from 98 to 131: score 16.7, E = 0.05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ +++lG+ l l++y +A+ ay++ +l+ ++ fh23011 98 SDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDY 131 PF07719.7.ls: domain 2 of 7, from 135 to 168: score 24.4, E = 0.00036 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++ly lGl+y++ + ++ A++a++++l dP+ fh23011 135 AAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSF 168 PF00515.18.ls: domain 2 of 6, from 135 to 168: score 31.3, E = 3.1e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +y lG++y++ + ++ Ai+a++++L +dP++ fh23011 135 AAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSF 168 PF00515.18.fs: domain 2 of 8, from 135 to 168: score 29.3, E = 2.5e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +y lG++y++ + ++ Ai+a++++L +dP++ fh23011 135 AAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSF 168 PF00515.18.ls: domain 3 of 6, from 210 to 243: score 10.4, E = 0.28 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae+ + ++++y+ + ky A eaye+ L+ + fh23011 210 AEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLS 243 PF00515.18.fs: domain 4 of 8, from 210 to 238: score 11.0, E = 0.039 *->aeayynlGnaylklgkydeAieayekALe<-* ae+ + ++++y+ + ky A eaye+ L+ fh23011 210 AEIQFHIAHLYETQRKYHSAKEAYEQLLQ 238 PF00515.18.fs: domain 5 of 8, from 274 to 288: score 8.4, E = 0.22 *->AieayekALeldPnn<-* Ai++++k Le dPn fh23011 274 AIQYLQKSLEADPNS 288 PF00515.18.ls: domain 4 of 6, from 289 to 322: score 12.9, E = 0.14 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + +y lG +y + gk ++A y++ ++ + fh23011 289 GQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEAS 322 PF00515.18.fs: domain 6 of 8, from 289 to 322: score 10.9, E = 0.041 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + +y lG +y + gk ++A y++ ++ + fh23011 289 GQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEAS 322 PF00515.18.ls: domain 5 of 6, from 323 to 356: score 28.5, E = 2.1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++++ +G++y +++++ +A++ay A++ld + fh23011 323 ADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGH 356 PF00515.18.fs: domain 7 of 8, from 323 to 356: score 26.5, E = 1.5e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++++ +G++y +++++ +A++ay A++ld + fh23011 323 ADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGH 356 PF00515.18.ls: domain 6 of 6, from 357 to 390: score 14.0, E = 0.1 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ lG +y++ +++++Ai++y A + fh23011 357 AAAWMDLGTLYESCNQPQDAIKCYLNATRSKSCS 390 PF00515.18.fs: domain 8 of 8, from 357 to 383: score 19.4, E = 0.00016 *->aeayynlGnaylklgkydeAieayekA<-* a a+ lG +y++ +++++Ai++y A fh23011 357 AAAWMDLGTLYESCNQPQDAIKCYLNA 383 PF02373.13.fs: domain 1 of 1, from 1138 to 1246: score 176.2, E = 1.3e-51 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+++p+S+tp+H+E+++++S+n+++++++++W+++P+ y++ ++ fh23011 1138 QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLN- 1183 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++k+ + l++l+ +++P++++L+e+++pvyrf+Q fh23011 1184 --DFCEKN-------N-------LNFLMGSWWPNLEDLYEANVPVYRFIQ 1217 kpGEfVitfPgayHavfNlGfniaeavNF<-* +pG++V++++g++H+v+ +G+++++a+N+ fh23011 1218 RPGDLVWINAGTVHWVQAIGWCNNIAWNV 1246 PF02373.13.ls: domain 1 of 1, from 1138 to 1246: score 178.1, E = 2.1e-50 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+++p+S+tp+H+E+++++S+n+++++++++W+++P+ y++ ++ fh23011 1138 QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLN- 1183 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++k+ + l++l+ +++P++++L+e+++pvyrf+Q fh23011 1184 --DFCEKN-------N-------LNFLMGSWWPNLEDLYEANVPVYRFIQ 1217 kpGEfVitfPgayHavfNlGfniaeavNF<-* +pG++V++++g++H+v+ +G+++++a+N+ fh23011 1218 RPGDLVWINAGTVHWVQAIGWCNNIAWNV 1246 //