hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-02215266/chunk_1/iprscan-20080810-02215266.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh23011
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 177.7    1.1e-48   1
SM00028                                                 115.0    8.4e-30   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/6      98   131 ..     1    34 []    14.4       12
SM00028    2/6     135   168 ..     1    34 []    27.6   0.0017
SM00028    3/6     210   243 ..     1    34 []    15.2      9.1
SM00028    4/6     289   322 ..     1    34 []    19.1     0.63
SM00028    5/6     323   356 ..     1    34 []    25.9   0.0057
SM00028    6/6     357   390 ..     1    34 []    12.8       18
SM00558    1/1    1100  1263 ..     1   214 []   177.7  1.1e-48

Alignments of top-scoring domains:
SM00028: domain 1 of 6, from 98 to 131: score 14.4, E = 12
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++ +++lG+  l+l+dy +A+ +y++  +l+ ++   
     fh23011    98    SDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDY    131  

SM00028: domain 2 of 6, from 135 to 168: score 27.6, E = 0.0017
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  ly lG++y++ + ++ Ai++++++L +dP++   
     fh23011   135    AAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSF    168  

SM00028: domain 3 of 6, from 210 to 243: score 15.2, E = 9.1
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ae+ + ++++y+ + +y  A e+ye+ L+ +      
     fh23011   210    AEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLS    243  

SM00028: domain 4 of 6, from 289 to 322: score 19.1, E = 0.63
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + +y lG +y + g+ ++A   y+++++  +     
     fh23011   289    GQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEAS    322  

SM00028: domain 5 of 6, from 323 to 356: score 25.9, E = 0.0057
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a++++ +G++y ++++  +A+++y  A++ld  +   
     fh23011   323    ADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGH    356  

SM00028: domain 6 of 6, from 357 to 390: score 12.8, E = 18
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a a+  lG +y++ ++ ++Ai++y  A +        
     fh23011   357    AAAWMDLGTLYESCNQPQDAIKCYLNATRSKSCS    390  

SM00558: domain 1 of 1, from 1100 to 1263: score 177.7, E = 1.1e-48
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++ ql++l+klP f+++     ++++nlls+++     ++ilg+++
     fh23011  1100    KWKLQLHELTKLPAFVRV-----VSAGNLLSHVG-----HTILGMNT 1136 

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         ++lym+++   gs+Tp H +++ ++SvN+++++++   + W+++
     fh23011  1137 ------VQLYMKVP---GSRTPGHQENNNFCSVNINIGPGD---CEWFVV 1174 

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   P+ ++  l+++++k                 ++ ++  s+w++ e+l+++
     fh23011  1175 PEGYWGVLNDFCEKN----------------NLNFLMGSWWPNLEDLYEA 1208 

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           vpvyrf+Q+pG+ v+i +G+ H+V+  G +++++a+N+
     fh23011  1209 N-----------VPVYRFIQRPGDLVWINAGTVHWVQAIG-WCNNIAWNV 1246 

                   aspewlpmglrlveelr<-*
                    +++  ++ l+++  ++   
     fh23011  1247 GPLTACQYKLAVERYEW    1263 

//