hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-02345245/chunk_1/iprscan-20080810-02345245.nocrc
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Query sequence: fh23202
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00271.21.fs Helicase conserved C-terminal domain         112.2    3.8e-32   1
PF00271.21.ls Helicase conserved C-terminal domain         114.2    3.5e-31   1
PF00270.19.fs DEAD/DEAH box helicase                        57.5    9.4e-16   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1      46   118 ..   125   213 .]    57.5  9.4e-16
PF00271.21.fs   1/1     186   268 ..     1    76 []   112.2  3.8e-32
PF00271.21.ls   1/1     186   268 ..     1    76 []   114.2  3.5e-31

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 46 to 118: score 57.5, E = 9.4e-16
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx
                   *->dIlvgTPgrLldlllkgrkregasldlknlkllVlDEAhrll.dmkG
                      +I++gTPg +ld      k  +  +d k++k++VlDEA+ +   + G
     fh23202    46    QIVIGTPGTVLDWC---SKL-KF-IDPKKIKVFVLDEADVMIaTQ-G 86   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   fgedleeilrrlprpklrrlsqdlpnrqtllfSATlprnvedl<-*
                   ++++  +i r+lp ++          +q llfSAT+ ++v ++   
     fh23202    87 HQDQSIRIQRMLP-RN----------CQMLLFSATFEDSVWKF    118  

PF00271.21.fs: domain 1 of 1, from 186 to 268: score 112.2, E = 3.8e-32
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l+++g++va l G+++ e+R +++e+Fr+gk kvLv+T+v++rGiD
     fh23202   186    ELsKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 232  

                   ipdvnlVInydlpwnpes......yiQRiGRaGRaG<-*
                   + +v++VIn+dlp + + ++++++y++RiGR+GR+G   
     fh23202   233 VEQVSVVINFDLPVDKDGnpdnetYLHRIGRTGRFG    268  

PF00271.21.ls: domain 1 of 1, from 186 to 268: score 114.2, E = 3.5e-31
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l+++g++va l G+++ e+R +++e+Fr+gk kvLv+T+v++rGiD
     fh23202   186    ELsKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 232  

                   ipdvnlVInydlpwnpes......yiQRiGRaGRaG<-*
                   + +v++VIn+dlp + + ++++++y++RiGR+GR+G   
     fh23202   233 VEQVSVVINFDLPVDKDGnpdnetYLHRIGRTGRFG    268  

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