# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh24539.fasta.nr -Q fh24539.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh24539, 144 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6816074 sequences Expectation_n fit: rho(ln(x))= 5.4690+/-0.000191; mu= 6.0807+/- 0.011 mean_var=94.5791+/-18.560, 0's: 33 Z-trim: 79 B-trim: 2319 in 1/64 Lambda= 0.131879 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088400|dbj|BAD92647.1| ras-related C3 botulin ( 144) 976 194.5 3.9e-48 gi|148687100|gb|EDL19047.1| RAS-related C3 botulin ( 256) 611 125.3 4.7e-27 gi|126308868|ref|XP_001379520.1| PREDICTED: simila ( 331) 549 113.6 2e-23 gi|47206781|emb|CAF93882.1| unnamed protein produc ( 139) 519 107.6 5.6e-22 gi|116667608|pdb|2H7V|A Chain A, Co-Crystal Struct ( 188) 518 107.5 8e-22 gi|42543638|pdb|1RYF|A Chain A, Alternative Splici ( 203) 518 107.5 8.5e-22 gi|149034945|gb|EDL89665.1| ras-related C3 botulin ( 211) 518 107.6 8.7e-22 gi|4836769|gb|AAD30547.1|AF136373_1 ras-related C3 ( 211) 518 107.6 8.7e-22 gi|74147756|dbj|BAE38744.1| unnamed protein produc ( 211) 518 107.6 8.7e-22 gi|167966513|gb|ACA13260.1| dsRed1/Pak1/Rac1/ECFP ( 775) 524 109.2 1e-21 gi|172054575|gb|ACB71132.1| EGFP-Pak1-Rac1-dsRed1- ( 798) 524 109.2 1e-21 gi|90076132|dbj|BAE87746.1| unnamed protein produc ( 126) 513 106.4 1.2e-21 gi|60459942|gb|AAX20142.1| ras-like protein Rac3 [ ( 150) 513 106.5 1.3e-21 gi|13096548|pdb|1FOE|B Chain B, Crystal Structure ( 177) 513 106.5 1.5e-21 gi|119389489|pdb|2FJU|A Chain A, Activated Rac1 Bo ( 178) 513 106.5 1.5e-21 gi|109157750|pdb|2G0N|A Chain A, The Crystal Struc ( 179) 513 106.5 1.5e-21 gi|118138331|pdb|2IC5|A Chain A, Crystal Structure ( 180) 513 106.5 1.5e-21 gi|190613450|pdb|2VRW|A Chain A, Critical Structur ( 184) 513 106.5 1.5e-21 gi|13096378|pdb|1G4U|R Chain R, Crystal Structure ( 184) 513 106.5 1.5e-21 gi|190875|gb|AAA36544.1| ras-like protein ( 191) 513 106.6 1.6e-21 gi|5738220|gb|AAD50299.1|AF174644_1 rac GTPase [Xe ( 192) 513 106.6 1.6e-21 gi|47226063|emb|CAG04437.1| unnamed protein produc ( 192) 513 106.6 1.6e-21 gi|134025807|gb|AAI35752.1| Rac3 protein [Xenopus ( 192) 513 106.6 1.6e-21 gi|27882091|gb|AAH44501.1| Ras-related C3 botulinu ( 192) 513 106.6 1.6e-21 gi|51701705|sp|Q6RUV5|RAC1_RAT Ras-related C3 botu ( 192) 513 106.6 1.6e-21 gi|3184512|gb|AAC18961.1| GTPase cRac1B [Gallus ga ( 192) 513 106.6 1.6e-21 gi|82408216|pdb|2C2H|A Chain A, Crystal Structure ( 192) 513 106.6 1.6e-21 gi|49903967|gb|AAH76433.1| Ras-related C3 botulinu ( 192) 513 106.6 1.6e-21 gi|161612245|gb|AAI55848.1| Zgc:175209 protein [Da ( 192) 513 106.6 1.6e-21 gi|46397673|sp|P60763|RAC3_HUMAN Ras-related C3 bo ( 192) 513 106.6 1.6e-21 gi|89130436|gb|AAI14273.1| Zgc:136799 [Danio rerio ( 192) 513 106.6 1.6e-21 gi|62026270|gb|AAH92101.1| MGC114731 protein [Xeno ( 192) 513 106.6 1.6e-21 gi|13279011|gb|AAH04247.1| Ras-related C3 botulinu ( 192) 513 106.6 1.6e-21 gi|61363436|gb|AAX42390.1| ras-related C3 botulinu ( 192) 513 106.6 1.6e-21 gi|26344958|dbj|BAC36128.1| unnamed protein produc ( 192) 513 106.6 1.6e-21 gi|30585149|gb|AAP36847.1| Homo sapiens ras-relate ( 193) 513 106.6 1.6e-21 gi|60654263|gb|AAX29824.1| ras-related C3 botulinu ( 193) 513 106.6 1.6e-21 gi|54695754|gb|AAV38249.1| ras-related C3 botulinu ( 193) 513 106.6 1.6e-21 gi|66558220|ref|XP_623951.1| PREDICTED: similar to ( 192) 512 106.4 1.8e-21 gi|163771138|gb|EDQ84809.1| predicted protein [Mon ( 192) 512 106.4 1.8e-21 gi|108874139|gb|EAT38364.1| rac gtpase [Aedes aegy ( 192) 512 106.4 1.8e-21 gi|157015450|gb|EAA11959.5| AGAP005445-PA [Anophel ( 192) 512 106.4 1.8e-21 gi|30385200|gb|AAP22281.1| Rac [Aplysia californic ( 192) 512 106.4 1.8e-21 gi|91092998|ref|XP_968397.1| PREDICTED: similar to ( 192) 512 106.4 1.8e-21 gi|13878933|sp|P34146.2|RAC1C_DICDI Rho-related pr ( 193) 512 106.4 1.8e-21 gi|156217623|gb|EDO38536.1| predicted protein [Nem ( 194) 512 106.4 1.8e-21 gi|290049|gb|AAC37392.1| Rac1B protein gi|7399 ( 194) 512 106.4 1.8e-21 gi|290047|gb|AAC37391.1| Rac1A protein gi|7399 ( 194) 512 106.4 1.8e-21 gi|166208506|sp|P34145.2|RAC1B_DICDI Rho-related p ( 194) 512 106.4 1.8e-21 gi|13878932|sp|P34144.2|RAC1A_DICDI Rho-related pr ( 194) 512 106.4 1.8e-21 >>gi|62088400|dbj|BAD92647.1| ras-related C3 botulinum t (144 aa) initn: 976 init1: 976 opt: 976 Z-score: 1019.4 bits: 194.5 E(): 3.9e-48 Smith-Waterman score: 976; 100.000% identity (100.000% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 fh2453 ALGGGRCRASASSPRRARRRGQRPRHPAPRRPQAARPSAAPRARRFLSQRPAAAAAAQRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ALGGGRCRASASSPRRARRRGQRPRHPAPRRPQAARPSAAPRARRFLSQRPAAAAAAQRA 10 20 30 40 50 60 70 80 90 100 110 120 fh2453 ALMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ALMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 70 80 90 100 110 120 130 140 fh2453 AGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::: gi|620 AGQEDYDRLRPLSYPQTVRIAADF 130 140 >>gi|148687100|gb|EDL19047.1| RAS-related C3 botulinum s (256 aa) initn: 635 init1: 564 opt: 611 Z-score: 640.8 bits: 125.3 E(): 4.7e-27 Smith-Waterman score: 634; 78.358% identity (79.851% similar) in 134 aa overlap (7-138:2-121) 10 20 30 40 50 fh2453 ALGGGRCRASASSPRRARRRGQRPRHPAPRRPQAARPSAAPRARRFLSQRPAAAAAA--Q : :: : :::::::. : : ::::: : ::::::: . gi|148 CCCASPSRALRARRRGQQSR--------------ASRARRFAPQPPAAAAAAAAH 10 20 30 40 60 70 80 90 100 110 fh2453 RAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RAAQMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 50 60 70 80 90 100 120 130 140 fh2453 DTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::: gi|148 DTAGQEDYDRLRPLSYPQTVGDTCGKDRPSRGKDKPIADVFLICFSLVSPASFENVRAKW 110 120 130 140 150 160 >>gi|126308868|ref|XP_001379520.1| PREDICTED: similar to (331 aa) initn: 585 init1: 549 opt: 549 Z-score: 575.6 bits: 113.6 E(): 2e-23 Smith-Waterman score: 549; 89.247% identity (90.323% similar) in 93 aa overlap (45-137:122-214) 20 30 40 50 60 70 fh2453 RRARRRGQRPRHPAPRRPQAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDG :: :: :: : : . :::::::::::: gi|126 IRPLTLARSLGSAPSALQSQPWLRRWGISLRFGSQTPAPAQPAPGPGHMQAIKCVVVGDG 100 110 120 130 140 150 80 90 100 110 120 130 fh2453 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 160 170 180 190 200 210 140 fh2453 PQTVRIAADF ::: gi|126 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIERLRDK 220 230 240 250 260 270 >>gi|47206781|emb|CAF93882.1| unnamed protein product [T (139 aa) initn: 519 init1: 519 opt: 519 Z-score: 549.7 bits: 107.6 E(): 5.6e-22 Smith-Waterman score: 519; 96.154% identity (98.718% similar) in 78 aa overlap (63-140:1-78) 40 50 60 70 80 90 fh2453 QAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPG :::::::::::::::::::::::::::::: gi|472 MQAIKCVVVGDGAVGKTCLLISYTTNAFPG 10 20 30 100 110 120 130 140 fh2453 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::: ::::::::::::::::::::::::::::::::::::::::.:. gi|472 EYIPPVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTMRVVLRPKCRFKAAS 40 50 60 70 80 90 gi|472 PRQLICNWCAAPAGSWKPALFAGSTQDTPPKTKRAGKTLTIPLPYYRFC 100 110 120 130 >>gi|116667608|pdb|2H7V|A Chain A, Co-Crystal Structure (188 aa) initn: 559 init1: 518 opt: 518 Z-score: 546.9 bits: 107.5 E(): 8e-22 Smith-Waterman score: 518; 100.000% identity (100.000% similar) in 76 aa overlap (62-137:4-79) 40 50 60 70 80 90 fh2453 PQAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFP :::::::::::::::::::::::::::::: gi|116 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFP 10 20 30 100 110 120 130 140 fh2453 GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::::::::::::::::::::::::: gi|116 GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS 40 50 60 70 80 90 gi|116 FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 100 110 120 130 140 150 >>gi|42543638|pdb|1RYF|A Chain A, Alternative Splicing O (203 aa) initn: 559 init1: 518 opt: 518 Z-score: 546.5 bits: 107.5 E(): 8.5e-22 Smith-Waterman score: 518; 100.000% identity (100.000% similar) in 76 aa overlap (63-138:3-78) 40 50 60 70 80 90 fh2453 QAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPG :::::::::::::::::::::::::::::: gi|425 GSMQAIKCVVVGDGAVGKTCLLISYTTNAFPG 10 20 30 100 110 120 130 140 fh2453 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::::::::::::::::::::::::: gi|425 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKD 40 50 60 70 80 90 gi|425 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 100 110 120 130 140 150 >>gi|149034945|gb|EDL89665.1| ras-related C3 botulinum t (211 aa) initn: 559 init1: 518 opt: 518 Z-score: 546.3 bits: 107.6 E(): 8.7e-22 Smith-Waterman score: 518; 100.000% identity (100.000% similar) in 76 aa overlap (63-138:1-76) 40 50 60 70 80 90 fh2453 QAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPG :::::::::::::::::::::::::::::: gi|149 MQAIKCVVVGDGAVGKTCLLISYTTNAFPG 10 20 30 100 110 120 130 140 fh2453 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::::::::::::::::::::::::: gi|149 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGDTCGKDRTSRGKD 40 50 60 70 80 90 gi|149 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 100 110 120 130 140 150 >>gi|4836769|gb|AAD30547.1|AF136373_1 ras-related C3 bot (211 aa) initn: 559 init1: 518 opt: 518 Z-score: 546.3 bits: 107.6 E(): 8.7e-22 Smith-Waterman score: 518; 100.000% identity (100.000% similar) in 76 aa overlap (63-138:1-76) 40 50 60 70 80 90 fh2453 QAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPG :::::::::::::::::::::::::::::: gi|483 MQAIKCVVVGDGAVGKTCLLISYTTNAFPG 10 20 30 100 110 120 130 140 fh2453 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::::::::::::::::::::::::: gi|483 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKD 40 50 60 70 80 90 gi|483 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 100 110 120 130 140 150 >>gi|74147756|dbj|BAE38744.1| unnamed protein product [M (211 aa) initn: 559 init1: 518 opt: 518 Z-score: 546.3 bits: 107.6 E(): 8.7e-22 Smith-Waterman score: 518; 100.000% identity (100.000% similar) in 76 aa overlap (63-138:1-76) 40 50 60 70 80 90 fh2453 QAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISYTTNAFPG :::::::::::::::::::::::::::::: gi|741 MQAIKCVVVGDGAVGKTCLLISYTTNAFPG 10 20 30 100 110 120 130 140 fh2453 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF :::::::::::::::::::::::::::::::::::::::::::::: gi|741 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGDTCGKDRPSRGKD 40 50 60 70 80 90 gi|741 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 100 110 120 130 140 150 >>gi|167966513|gb|ACA13260.1| dsRed1/Pak1/Rac1/ECFP fusi (775 aa) initn: 559 init1: 518 opt: 524 Z-score: 545.1 bits: 109.2 E(): 1e-21 Smith-Waterman score: 524; 93.976% identity (95.181% similar) in 83 aa overlap (56-138:313-395) 30 40 50 60 70 80 fh2453 HPAPRRPQAARPSAAPRARRFLSQRPAAAAAAQRAALMQAIKCVVVGDGAVGKTCLLISY .: : ::::::::::::::::::::::: gi|167 KNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAGRILAMQAIKCVVVGDGAVGKTCLLISY 290 300 310 320 330 340 90 100 110 120 130 140 fh2453 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVRIAADF ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKD 350 360 370 380 390 400 gi|167 ITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 410 420 430 440 450 460 144 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 03:38:42 2008 done: Sun Aug 10 03:41:44 2008 Total Scan time: 562.100 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]