hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-03414527/chunk_1/iprscan-20080810-03414527.nocrc
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Query sequence: fh24539
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                     143.5    1.7e-42   1
PF00071.12.ls Ras family                                      13.9    2.4e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00071.12.fs   1/1      67   137 ..     1    72 [.   143.5  1.7e-42
PF00071.12.ls   1/1      67   144 .]     1   174 []    13.9  2.4e-10

Alignments of top-scoring domains:
PF00071.12.fs: domain 1 of 1, from 67 to 137: score 143.5, E = 1.7e-42
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+V+vGDg+VGK++Lli +t+n Fp eYipT+ +D+y+ +v+vdgk+
     fh24539    67    KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 112  

                   vkLqIWDTAGQErFralrpaYYRgA<-*
                   v L +WDTAGQE++++lrp++Y+++   
     fh24539   113 VNLGLWDTAGQEDYDRLRPLSYPQT    137  

PF00071.12.ls: domain 1 of 1, from 67 to 144: score 13.9, E = 2.4e-10
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+V+vGDg+VGK++Lli +t+n Fp eYipT+ +D+y+ +v+vdgk+
     fh24539    67    KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 112  

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v L +WDTAGQE++++lrp++Y+++                         
     fh24539   113 VNLGLWDTAGQEDYDRLRPLSYPQT------------------------- 137  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +r a   +                                          
     fh24539   138 VRIAA--D------------------------------------------ 143  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                                                 
     fh24539   144 --------------------------F    144  

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