hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-03414527/chunk_1/iprscan-20080810-03414527.nocrc
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Query sequence: fh24539
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00174                                                  80.5    2.1e-19   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00174     1/1      68   143 ..     1   180 []    80.5  2.1e-19

Alignments of top-scoring domains:
SM00174: domain 1 of 1, from 68 to 143: score 80.5, E = 2.1e-19
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTVFENYsadvevpDgkpv
                      +VvVGDGaVGKTCLLisYTtnaFP +Y+PTVF+NYsa+v+v Dgkpv
     fh24539    68    CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV 113  

                   nLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVdspaSfeNVkeKWyPEv
                   nLgLWDTAGQEdYDRLRPLSYPqt                          
     fh24539   114 NLGLWDTAGQEDYDRLRPLSYPQT-------------------------- 137  

                   khfcPnvPiiLVGtKlDLRnDedtleelsekkqePvtteqGeanskialA
                                     R                               
     fh24539   138 -----------------VR------------------------------- 139  

                   keIGAvkYlECSAltqeGvkeVFeeAiraaLnk<-*
                     I A                               
     fh24539   140 --IAA---------------------------D    143  

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