hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04130106/chunk_1/iprscan-20080810-04130106.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh25839
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00643.14.ls B-box zinc finger                               75.2    1.9e-19   2
PF00643.14.fs B-box zinc finger                               74.0    4.4e-19   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           25.7    1.2e-08   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           27.3    4.9e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      85   119 ..     1    50 []    25.7  1.2e-08
PF00097.15.ls   1/1      85   119 ..     1    50 []    27.3  4.9e-05
PF00643.14.fs   1/2     152   194 ..     1    50 []    45.4  6.3e-11
PF00643.14.ls   1/2     152   194 ..     1    50 []    47.2    5e-11
PF00643.14.ls   2/2     212   260 ..     1    50 []    28.0  3.2e-05
PF00643.14.fs   2/2     212   255 ..     1    41 [.    28.6  1.5e-06

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 85 to 119: score 25.7, E = 1.2e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C+ e+k p+     +lpC+H+      C+ Cle         +C
     fh25839    85    CQQCQAEAKCPK-----LLPCLHT-----LCSGCLEASGM-----QC 116  

                   plC<-*
                   p+C   
     fh25839   117 PIC    119  

PF00097.15.ls: domain 1 of 1, from 85 to 119: score 27.3, E = 4.9e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C+ e+k p+     +lpC+H+      C+ Cle         +C
     fh25839    85    CQQCQAEAKCPK-----LLPCLHT-----LCSGCLEASGM-----QC 116  

                   plC<-*
                   p+C   
     fh25839   117 PIC    119  

PF00643.14.fs: domain 1 of 2, from 152 to 194: score 45.4, E = 6.3e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++ vC++++  e + ++C +++qlLC+ C+++  H   ++f +H  
     fh25839   152    DAQAVCTRCK--ESADFWCFECEQLLCAKCFEA--H---QWFLKHEA 191  

                   vpl<-*
                   +pl   
     fh25839   192 RPL    194  

PF00643.14.ls: domain 1 of 2, from 152 to 194: score 47.2, E = 5e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++ vC++++  e + ++C +++qlLC+ C+++  H   ++f +H  
     fh25839   152    DAQAVCTRCK--ESADFWCFECEQLLCAKCFEA--H---QWFLKHEA 191  

                   vpl<-*
                   +pl   
     fh25839   192 RPL    194  

PF00643.14.ls: domain 2 of 2, from 212 to 260: score 28.0, E = 3.2e-05
                   *->ekervC..peHgdneklslFCedDgqlLCvvCrls.geHqanklfrg
                       ++++C++p+H+++ + s++C+ ++++LC++C+l +  H       +
     fh25839   212    TNNIFCsnPNHRTPTLTSIYCRGCSKPLCCSCALLdSSH----SELK 254  

                   Htvvpl<-*
                   + +      
     fh25839   255 CDISAE    260  

PF00643.14.fs: domain 2 of 2, from 212 to 255: score 28.6, E = 1.5e-06
                   *->ekervC..peHgdneklslFCedDgqlLCvvCrls.geHqankl<-*
                       ++++C++p+H+++ + s++C+ ++++LC++C+l +  H+  k+   
     fh25839   212    TNNIFCsnPNHRTPTLTSIYCRGCSKPLCCSCALLdSSHSELKC    255  

//