hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-04192262/chunk_1/iprscan-20080810-04192262.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh25863 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06583.2.fs Neogenin C-terminus 887.0 3.8e-270 1 PF06583.2.ls Neogenin C-terminus 888.8 2.3e-264 1 PF00041.11.ls Fibronectin type III domain 360.6 2.3e-105 6 PF00041.11.fs Fibronectin type III domain 348.6 9.6e-102 6 PF07679.6.fs Immunoglobulin I-set domain 81.8 2.9e-23 2 PF07679.6.ls Immunoglobulin I-set domain 80.2 6e-21 1 PF00047.15.fs Immunoglobulin domain 33.2 2.4e-08 1 PF00047.15.ls Immunoglobulin domain 35.0 2.4e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.fs 1/2 17 103 .. 1 96 [] 78.3 3.1e-22 PF07679.6.ls 1/1 17 103 .. 1 96 [] 80.2 6e-21 PF00047.15.ls 1/1 31 88 .. 1 65 [] 35.0 2.4e-07 PF00047.15.fs 1/1 31 88 .. 1 65 [] 33.2 2.4e-08 PF00041.11.fs 1/6 135 221 .. 1 84 [] 51.8 3.1e-14 PF00041.11.ls 1/6 135 221 .. 1 84 [] 53.8 5.3e-13 PF00041.11.fs 2/6 235 317 .. 1 84 [] 85.7 5.8e-24 PF00041.11.ls 2/6 235 317 .. 1 84 [] 87.7 3.4e-23 PF00041.11.ls 3/6 329 417 .. 1 84 [] 77.8 3.1e-20 PF00041.11.fs 3/6 329 417 .. 1 84 [] 75.8 4e-21 PF00041.11.fs 4/6 435 514 .. 1 84 [] 47.8 4.4e-13 PF00041.11.ls 4/6 435 514 .. 1 84 [] 49.7 8.8e-12 PF00041.11.ls 5/6 533 622 .. 1 84 [] 22.7 0.00079 PF00041.11.ls 6/6 634 724 .. 1 84 [] 68.8 1.6e-17 PF00041.11.fs 6/6 634 724 .. 1 84 [] 66.8 1.5e-18 PF06583.2.fs 1/1 748 1130 .] 1 398 [] 887.0 3.8e-270 PF06583.2.ls 1/1 748 1130 .] 1 398 [] 888.8 2.3e-264 Alignments of top-scoring domains: PF07679.6.fs: domain 1 of 2, from 17 to 103: score 78.3, E = 3.1e-22 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++p ++ + e +++feC+VtG P+PtV W K+G ++ + fh25863 17 PEFLKQPTNIYAHESMDIVFECEVTGKPTPTVKWVKNGDMVIP---- 59 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< sd fk++ ++ L +++ ++D+G Y C+A+N +G a+a a+L++ fh25863 60 SDYFKIVKEH-----NLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLII 103 -* fh25863 - - PF07679.6.ls: domain 1 of 1, from 17 to 103: score 80.2, E = 6e-21 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++p ++ + e +++feC+VtG P+PtV W K+G ++ + fh25863 17 PEFLKQPTNIYAHESMDIVFECEVTGKPTPTVKWVKNGDMVIP---- 59 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< sd fk++ ++ L +++ ++D+G Y C+A+N +G a+a a+L++ fh25863 60 SDYFKIVKEH-----NLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLII 103 -* fh25863 - - PF00047.15.ls: domain 1 of 1, from 31 to 88: score 35.0, E = 2.4e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + + C+v +g p +tv W +ng ++++++ +++ +++ fh25863 31 SMDIVFECEV--TGKPTPTVKWVKNGDmVIpSDYFKIVKEHN----- 70 tsLtitnvtpeDggtYtCvv<-* L+++ + ++D+g+Y C + fh25863 71 --LQVLGLVKSDEGFYQCIA 88 PF00047.15.fs: domain 1 of 1, from 31 to 88: score 33.2, E = 2.4e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + + C+v +g p +tv W +ng ++++++ +++ +++ fh25863 31 SMDIVFECEV--TGKPTPTVKWVKNGDmVIpSDYFKIVKEHN----- 70 tsLtitnvtpeDggtYtCvv<-* L+++ + ++D+g+Y C + fh25863 71 --LQVLGLVKSDEGFYQCIA 88 PF00041.11.fs: domain 1 of 6, from 135 to 221: score 51.8, E = 3.1e-14 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+++ ++ v++ + l+W P ++++g+ Y+v y +++ fh25863 135 PSAPRDVVASLVSTRFIKLTWRTPAsdPHGDNLTYSVFY-TKEGIAR 180 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +e t + ++++t+++L P t Y +rV A+n +G+G+ S fh25863 181 eRVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGsGESS 221 PF00041.11.ls: domain 1 of 6, from 135 to 221: score 53.8, E = 5.3e-13 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+++ ++ v++ + l+W P ++++g+ Y+v y +++ fh25863 135 PSAPRDVVASLVSTRFIKLTWRTPAsdPHGDNLTYSVFY-TKEGIAR 180 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +e t + ++++t+++L P t Y +rV A+n +G+G+ S fh25863 181 eRVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGsGESS 221 PF00041.11.fs: domain 2 of 6, from 235 to 317: score 85.7, E = 5.8e-24 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++ nl++ + ++ts+t++W+ P +gng+i++Y++ y +++ +g + fh25863 235 PGPAPNLRAYAASPTSITVTWETPVsGNGEIQNYKL-Y-YME-KGTD 278 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ke++v+ +++syt++gLk +teY++rV+A+n +G+G + fh25863 279 KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGpGVST 317 PF00041.11.ls: domain 2 of 6, from 235 to 317: score 87.7, E = 3.4e-23 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++ nl++ + ++ts+t++W+ P +gng+i++Y++ y +++ +g + fh25863 235 PGPAPNLRAYAASPTSITVTWETPVsGNGEIQNYKL-Y-YME-KGTD 278 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ke++v+ +++syt++gLk +teY++rV+A+n +G+G + fh25863 279 KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGpGVST 317 PF00041.11.ls: domain 3 of 6, from 329 to 417: score 77.8, E = 3.1e-20 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP+nl+ + ++s s+ ++W+pP + + ng itgY+++yR+ +++ fh25863 329 PsAAPQNLSLEVRNSKSIMIHWQPPApatQNGQITGYKIRYRKASRK 375 gewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++e v+gt+ s ++gL gteY++rV+A++ +G+Gp + fh25863 376 SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGtGPAT 417 PF00041.11.fs: domain 3 of 6, from 329 to 417: score 75.8, E = 4e-21 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP+nl+ + ++s s+ ++W+pP + + ng itgY+++yR+ +++ fh25863 329 PsAAPQNLSLEVRNSKSIMIHWQPPApatQNGQITGYKIRYRKASRK 375 gewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++e v+gt+ s ++gL gteY++rV+A++ +G+Gp + fh25863 376 SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGtGPAT 417 PF00041.11.fs: domain 4 of 6, from 435 to 514: score 47.8, E = 4.4e-13 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P P+ l+v++ ts+++sW+pP++ n ++ gY + y ++++ fh25863 435 PEVPSSLHVRP-LVTSIVVSWTPPEnQNIVVRGYAIGY--GIGSPHA 478 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++ v+ ++ yt+++L P + Y+++++A n++ +e fh25863 479 QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNV--GEG 514 PF00041.11.ls: domain 4 of 6, from 435 to 514: score 49.7, E = 8.8e-12 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P P+ l+v++ ts+++sW+pP++ n ++ gY + y ++++ fh25863 435 PEVPSSLHVRP-LVTSIVVSWTPPEnQNIVVRGYAIGY--GIGSPHA 478 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++ v+ ++ yt+++L P + Y+++++A n++ +e fh25863 479 QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNV--GEG 514 PF00041.11.ls: domain 5 of 6, from 533 to 622: score 22.7, E = 0.00079 *->P.saPtnltvtdvtstsltlsWspPt.....gngpitgYevtyRqpk P +P +++++ ++ ++++++W + ++++ + +Y+v +++ fh25863 533 PmMPPVGVQASILSHDTIRITWADNSlpkhqKITDSRYYTV-R-WKT 577 ngge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* n + ++k ++ tt sy +tgLkP+t Y+++V +g ++ +S fh25863 578 NIPAnTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRsSTWS 622 PF00041.11.ls: domain 6 of 6, from 634 to 724: score 68.8, E = 1.6e-17 *->P.saPtnltvtdv..tstsltlsWspPt.gngpitgYevtyRqpkng P+s+P+++tv + ++ + ++ ++W+pP++ ng+itgY + y +++ + fh25863 634 PtSPPKDVTVVSKegKPKTIIVNWQPPSeANGKITGYIIYY-STDVN 679 ge...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e ++w+ v g+ +++++ L+ +t+Y +++qA+n +G Gp S fh25863 680 AEihdWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGmGPMS 724 PF00041.11.fs: domain 6 of 6, from 634 to 724: score 66.8, E = 1.5e-18 *->P.saPtnltvtdv..tstsltlsWspPt.gngpitgYevtyRqpkng P+s+P+++tv + ++ + ++ ++W+pP++ ng+itgY + y +++ + fh25863 634 PtSPPKDVTVVSKegKPKTIIVNWQPPSeANGKITGYIIYY-STDVN 679 ge...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e ++w+ v g+ +++++ L+ +t+Y +++qA+n +G Gp S fh25863 680 AEihdWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGmGPMS 724 PF06583.2.fs: domain 1 of 1, from 748 to 1130: score 887.0, E = 3.8e-270 *->vSlteppigtmqePdgsatgqdNsnLLviIIvsvGVitivVvvivav +S+++pp++++++P+gs+t++++sn+L++IIvsvGVitivVvvi+av fh25863 748 GSDYKPPMSGSNSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVIIAV 794 lCtRrttsqqkkkraackSvngshKyKgnvkdlKPPDLWIHHerlELKnI +CtRrtts+qkkkraackSvngshKyKgn+kd+KPPDLWIHHerlELK+I fh25863 795 FCTRRTTSHQKKKRAACKSVNGSHKYKGNSKDVKPPDLWIHHERLELKPI 844 DKspetvnPVmtDtpiprgsqdlTPvsvsmseyeveqrrnSyrGhesEda DKsp++ nP+mtDtpipr+sqd+TPv++sm +++++qrrnSyrGhesEd fh25863 845 DKSPDP-NPIMTDTPIPRNSQDITPVDNSM-DSNIHQRRNSYRGHESED- 891 GsSMSTLersLAgRRgmRpKlMmPfDaQppqPVVsahpvnsLdkaqrsYv SMSTL AgRRgmRpK+MmPfD+QppqPV+sahp++sLd+ +++++ fh25863 892 --SMSTL----AGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPHHHFH 935 pGiLtsptngylhrqqylRsvatpyshvdRGfGaertqsvrntpqsetlP +L+sp ++ l ++ ++ ++ t +s dR a +t+svrntp+++t+P fh25863 936 SSSLASPARSHLYHPGSPWPIGTSMSLSDR---ANSTESVRNTPSTDTMP 982 qSnsqacttdhsePeGgtdasFlnaSsaeeepgrviptahvrptHPLKSF +S+sq+c+tdh++PeG+t++s+l aSs+ee++g+++ptahvrp+HPLKSF fh25863 983 ASSSQTCCTDHQDPEGATSSSYL-ASSQEEDSGQSLPTAHVRPSHPLKSF 1031 AvPaiPPpggAidePalpsTPlLSqrgpnqskhsvktaSiGtlgRlrgPm AvPaiPPpg++ ++PalpsTPlLSq+++n++ hsvktaSiGtlgR+r+Pm fh25863 1032 AVPAIPPPGPPTYDPALPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPM 1081 sPVvVPsApEVqeEstrltEDsassyetdELseeMAhLEGLMKDLnAITt PVvVPsApEV +E tr++EDs+ssye+dEL++eMAhLEGLMKDLnAITt fh25863 1082 -PVVVPSAPEV-QETTRMLEDSESSYEPDELTKEMAHLEGLMKDLNAITT 1129 a<-* a fh25863 1130 A 1130 PF06583.2.ls: domain 1 of 1, from 748 to 1130: score 888.8, E = 2.3e-264 *->vSlteppigtmqePdgsatgqdNsnLLviIIvsvGVitivVvvivav +S+++pp++++++P+gs+t++++sn+L++IIvsvGVitivVvvi+av fh25863 748 GSDYKPPMSGSNSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVIIAV 794 lCtRrttsqqkkkraackSvngshKyKgnvkdlKPPDLWIHHerlELKnI +CtRrtts+qkkkraackSvngshKyKgn+kd+KPPDLWIHHerlELK+I fh25863 795 FCTRRTTSHQKKKRAACKSVNGSHKYKGNSKDVKPPDLWIHHERLELKPI 844 DKspetvnPVmtDtpiprgsqdlTPvsvsmseyeveqrrnSyrGhesEda DKsp++ nP+mtDtpipr+sqd+TPv++sm +++++qrrnSyrGhesEd fh25863 845 DKSPDP-NPIMTDTPIPRNSQDITPVDNSM-DSNIHQRRNSYRGHESED- 891 GsSMSTLersLAgRRgmRpKlMmPfDaQppqPVVsahpvnsLdkaqrsYv SMSTL AgRRgmRpK+MmPfD+QppqPV+sahp++sLd+ +++++ fh25863 892 --SMSTL----AGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPHHHFH 935 pGiLtsptngylhrqqylRsvatpyshvdRGfGaertqsvrntpqsetlP +L+sp ++ l ++ ++ ++ t +s dR a +t+svrntp+++t+P fh25863 936 SSSLASPARSHLYHPGSPWPIGTSMSLSDR---ANSTESVRNTPSTDTMP 982 qSnsqacttdhsePeGgtdasFlnaSsaeeepgrviptahvrptHPLKSF +S+sq+c+tdh++PeG+t++s+l aSs+ee++g+++ptahvrp+HPLKSF fh25863 983 ASSSQTCCTDHQDPEGATSSSYL-ASSQEEDSGQSLPTAHVRPSHPLKSF 1031 AvPaiPPpggAidePalpsTPlLSqrgpnqskhsvktaSiGtlgRlrgPm AvPaiPPpg++ ++PalpsTPlLSq+++n++ hsvktaSiGtlgR+r+Pm fh25863 1032 AVPAIPPPGPPTYDPALPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPM 1081 sPVvVPsApEVqeEstrltEDsassyetdELseeMAhLEGLMKDLnAITt PVvVPsApEV +E tr++EDs+ssye+dEL++eMAhLEGLMKDLnAITt fh25863 1082 -PVVVPSAPEV-QETTRMLEDSESSYEPDELTKEMAHLEGLMKDLNAITT 1129 a<-* a fh25863 1130 A 1130 //