hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04192262/chunk_1/iprscan-20080810-04192262.nocrc
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Query sequence: fh25863
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00060                                                 310.9    9.2e-89   6
SM00408                                                  48.8    7.3e-10   1
SM00409                                                  45.3    7.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      23   104 ..     1    58 []    45.3  7.8e-09
SM00408    1/1      29    93 ..     1    56 []    48.8  7.3e-10
SM00060    1/6     135   218 ..     1    69 []    56.1  4.5e-12
SM00060    2/6     235   314 ..     1    69 []    71.0  1.5e-16
SM00060    3/6     330   414 ..     1    69 []    52.5  5.6e-11
SM00060    4/6     435   514 ..     1    69 []    48.8  7.3e-10
SM00060    5/6     534   619 ..     1    69 []    38.3    1e-06
SM00060    6/6     635   721 ..     1    69 []    44.3  1.7e-08

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 23 to 104: score 45.3, E = 7.8e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p ++++ e  +++++C++++++++t++W ++++   +++  +  + +
     fh25863    23    PTnIYAHESMDIVFECeVTgkptpTVKWVkngdmvipsdyfkivkeh 69   

                   .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +L++ ++ ++D+   G Y+C a+++ g+a++  g++L++l   
     fh25863    70 nLQVlGLVKSDE---GFYQCIAEndVGNAQA--GAQLIIL    104  

SM00408: domain 1 of 1, from 29 to 93: score 48.8, E = 7.3e-10
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp.......sgstLtikn
                      +e  +++++C+++g+p+p+++W+k+++  +p++  +  ++  L++  
     fh25863    29    HESMDIVFECEVTGKPTPTVKWVKngDMVIPsdyfkivKEHNLQVLG 75   

                   vsleDsGlYtCvArNsvg<-*
                     ++D+G Y+C+A+N vg   
     fh25863    76 LVKSDEGFYQCIAENDVG    93   

SM00060: domain 1 of 6, from 135 to 218: score 56.1, E = 4.5e-12
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr..
                      P++P++   ++++ v+++       + l+W  P ++++++ ++Y++ 
     fh25863   135    PSAPRD---VVASLVSTR------FIKLTWRTPasdphgdNLTYSvf 172  

                   .....................ytltgLkPgaepwteYefrVrAvngndaG
                    ++++  ++++++++ +++ ++t+ +L P     t Y frV A n+  +G
     fh25863   173 ytkegiarerventshpgemqVTIQNLMPA----TVYIFRVMAQNK--HG 216  

                   eg<-*
                   +g   
     fh25863   217 SG    218  

SM00060: domain 2 of 6, from 235 to 314: score 71.0, E = 1.5e-16
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      Pgp +n   lr+ + ++t      s+t++We P +++++i +Y+   
     fh25863   235    PGPAPN---LRAYAASPT------SITVTWETPvsgngeIQNYKlyy 272  

                   .................ytltgLkPgaepwteYefrVrAvngndaGeg<-
                    ++++++++++++++ +yt+ gLk +    teY+frV+A+n+  +G+g  
     fh25863   273 mekgtdkeqdvdvsshsYTINGLKKY----TEYSFRVVAYNK--HGPG   314  

                   *
                    
     fh25863     -   -    

SM00060: domain 3 of 6, from 330 to 414: score 52.5, E = 5.6e-11
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                        +P+n   l+++  +s       s+ ++W+pP +   ++ i+gY+ 
     fh25863   330    SAAPQN---LSLEVRNSK------SIMIHWQPPapatqngqITGYKi 367  

                   ......................ytltgLkPgaepwteYefrVrAvngnda
                   + ++ +++++++++ +++++ +  ++gL  g    teY+frV+A +   +
     fh25863   368 ryrkasrksdvtetlvsgtqlsQLIEGLDRG----TEYNFRVAALTI--N 411  

                   Geg<-*
                   G g   
     fh25863   412 GTG    414  

SM00060: domain 4 of 6, from 435 to 514: score 48.8, E = 7.3e-10
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                      P  Ps    l+v++  +       s+++sW+pP++ +    ++ +gY
     fh25863   435    PEVPSS---LHVRPLVT-------SIVVSWTPPenqnivvrgyAIGY 471  

                   r.................ytltgLkPgaepwteYefrVrAvngndaGeg<
                     +++  ++ +++ +++ yt+++L P     + Y+++++A+n   +Geg 
     fh25863   472 GigsphaqtikvdykqryYTIENLDPS----SHYVITLKAFNN--VGEG  514  

                   -*
                     
     fh25863     -    -    

SM00060: domain 5 of 6, from 534 to 619: score 38.3, E = 1e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                        pP +   ++++  + +      +++++W   + +++ +  ++ ++
     fh25863   534    MMPPVG---VQASILSHD------TIRITWADNslpkhqkitdsryy 571  

                   ivgYr..................ytltgLkPgaepwteYefrVrAvngnd
                   +v+++++ + +++ ++ + ++ +y +tgLkP+    t Yef+V +  g  
     fh25863   572 TVRWKtnipantkyknanattlsYLVTGLKPN----TLYEFSVMVTKG-- 615  

                   aGeg<-*
                   + ++   
     fh25863   616 RRSS    619  

SM00060: domain 6 of 6, from 635 to 721: score 44.3, E = 1.7e-08
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                       +pP++   ++v++    +     ++ + W+pP++ +++  ++i++Y
     fh25863   635    TSPPKD---VTVVSKEGKPK----TIIVNWQPPseangkitgyIIYY 674  

                   r.....................ytltgLkPgaepwteYefrVrAvngnda
                   +++++ +  +++ +++++++ ++ +  L+ +    t Y f+++A+n+  +
     fh25863   675 StdvnaeihdwviepvvgnrltHQIQELTLD----TPYYFKIQARNS--K 718  

                   Geg<-*
                   G g   
     fh25863   719 GMG    721  

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