hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20100311/iprscan-20100311-17583323/chunk_1/iprscan-20100311-17583323.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh25931 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01426.8.ls BAH domain 281.2 1.9e-81 2 PF01426.8.fs BAH domain 277.5 2.4e-80 2 PF00145.8.fs C-5 cytosine-specific DNA methylase 155.9 9.8e-44 3 PF00145.8.ls C-5 cytosine-specific DNA methylase 137.6 3.1e-38 1 PF06464.2.ls DMAP1-binding Domain 132.8 8.6e-37 1 PF06464.2.fs DMAP1-binding Domain 131.1 2.9e-36 1 PF02008.10.fs CXXC zinc finger 87.4 7e-35 1 PF02008.10.ls CXXC zinc finger 89.3 1.1e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06464.2.ls 1/1 3 93 .. 1 116 [] 132.8 8.6e-37 PF06464.2.fs 1/1 3 93 .. 1 116 [] 131.1 2.9e-36 PF02008.10.fs 1/1 632 678 .. 1 49 [] 87.4 7e-35 PF02008.10.ls 1/1 632 678 .. 1 49 [] 89.3 1.1e-23 PF01426.8.fs 1/2 742 867 .. 1 159 [] 143.6 4.9e-40 PF01426.8.ls 1/2 742 867 .. 1 159 [] 145.4 1.4e-40 PF01426.8.fs 2/2 953 1087 .. 1 159 [] 133.9 4e-37 PF01426.8.ls 2/2 953 1087 .. 1 159 [] 135.8 1.1e-37 PF00145.8.ls 1/1 1126 1584 .. 1 418 [] 137.6 3.1e-38 PF00145.8.fs 1/3 1126 1217 .. 1 81 [. 54.6 7.6e-15 PF00145.8.fs 2/3 1245 1304 .. 110 171 .. 31.7 1.4e-08 PF00145.8.fs 3/3 1509 1584 .. 322 418 .] 69.5 6.5e-19 Alignments of top-scoring domains: PF06464.2.ls: domain 1 of 1, from 3 to 93: score 132.8, E = 8.6e-37 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr +a sLP++Vr+RL++L++d ++TeK+++K+Kl+LL+eFL++++ fh25931 3 PAISLPDDVRRRLKDLERD----SLTEKECVKEKLNLLHEFLQTEI- 44 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa +nql++le+kl++eelsee+yl+kVk+lL+ fh25931 45 --------------------KNQLCDLETKLRKEELSEEGYLAKVKSLLN 74 kelerengkpmpskersgl<-* k+l++eng ++ + e +g fh25931 75 KDLSLENGAHAYNREVNGR 93 PF06464.2.fs: domain 1 of 1, from 3 to 93: score 131.1, E = 2.9e-36 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr +a sLP++Vr+RL++L++d ++TeK+++K+Kl+LL+eFL++++ fh25931 3 PAISLPDDVRRRLKDLERD----SLTEKECVKEKLNLLHEFLQTEI- 44 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa +nql++le+kl++eelsee+yl+kVk+lL+ fh25931 45 --------------------KNQLCDLETKLRKEELSEEGYLAKVKSLLN 74 kelerengkpmpskersgl<-* k+l++eng ++ + e +g fh25931 75 KDLSLENGAHAYNREVNGR 93 PF02008.10.fs: domain 1 of 1, from 632 to 678: score 87.4, E = 7e-35 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR +n +krrrCGvCe+Cq+p +CG+C+aC+d++kFGG+gr+kQ +C +R fh25931 632 ENAFKRRRCGVCEVCQQP-ECGKCKACKDMVKFGGSGRSKQ-ACQER 676 RC<-* RC fh25931 677 RC 678 PF02008.10.ls: domain 1 of 1, from 632 to 678: score 89.3, E = 1.1e-23 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR +n +krrrCGvCe+Cq+p +CG+C+aC+d++kFGG+gr+kQ +C +R fh25931 632 ENAFKRRRCGVCEVCQQP-ECGKCKACKDMVKFGGSGRSKQ-ACQER 676 RC<-* RC fh25931 677 RC 678 PF01426.8.fs: domain 1 of 2, from 742 to 867: score 143.6, E = 4.9e-40 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeivelfe et++vGD+V v pdd +++p+y ar+ + +e fh25931 742 ETLEVGDCVSVIPDD--------------SSKPLYLARVTAL---WE 771 dsdgskekmvhvrwfyRPeetPyikslgrafnkDirEvflsdecddvple ds+++ +m+h++wf+ + +t +lg+++++ E+fl+dec+d++l+ fh25931 772 DSSNG--QMFHAHWFCAGTDT----VLGATSDP--LELFLVDECEDMQLS 813 diigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedvFfCell i++k++V++k++ e++ +e++++++++l++ ++++++f++l+ fh25931 814 YIHSKVKVIYKAPSENWAMEGGMDPESLLEG--------DDGKTYFYQLW 855 YdpekgsFkklp<-* Yd+ +++F+++p fh25931 856 YDQDYARFESPP 867 PF01426.8.ls: domain 1 of 2, from 742 to 867: score 145.4, E = 1.4e-40 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeivelfe et++vGD+V v pdd +++p+y ar+ + +e fh25931 742 ETLEVGDCVSVIPDD--------------SSKPLYLARVTAL---WE 771 dsdgskekmvhvrwfyRPeetPyikslgrafnkDirEvflsdecddvple ds+++ +m+h++wf+ + +t +lg+++++ E+fl+dec+d++l+ fh25931 772 DSSNG--QMFHAHWFCAGTDT----VLGATSDP--LELFLVDECEDMQLS 813 diigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedvFfCell i++k++V++k++ e++ +e++++++++l++ ++++++f++l+ fh25931 814 YIHSKVKVIYKAPSENWAMEGGMDPESLLEG--------DDGKTYFYQLW 855 YdpekgsFkklp<-* Yd+ +++F+++p fh25931 856 YDQDYARFESPP 867 PF01426.8.fs: domain 2 of 2, from 953 to 1087: score 133.9, E = 4e-37 *->etysvGDfVlvepddp.knleetfKagrnvalepyyvarIeeivelf e+++++ + ++++ +++nl+ a+epy+++rI+ei f fh25931 953 EDLYPEHYRKYSDYIKgSNLD---------APEPYRIGRIKEI---F 987 edsdgsk.....ekmvhvrwfyRPeetPyikslgrafnkDirEvflsdec + ++ + ++++++++++v+ fyRPe+t +ks ++ ++ Di+ +++sde+ fh25931 988 CPKKSNGrpnetDIKIRVNKFYRPENT--HKSTPASYHADINLLYWSDEE 1035 ddvplediigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedv ++v++++++g+C+V+++ d++++ + ++ +g++++ fh25931 1036 AVVDFKAVQGRCTVEYGEDLPECVQVYS----------------MGGPNR 1069 FfCellYdpekgsFkklp<-* F++ ++Y+ + +sF+++p fh25931 1070 FYFLEAYNAKSKSFEDPP 1087 PF01426.8.ls: domain 2 of 2, from 953 to 1087: score 135.8, E = 1.1e-37 *->etysvGDfVlvepddp.knleetfKagrnvalepyyvarIeeivelf e+++++ + ++++ +++nl+ a+epy+++rI+ei f fh25931 953 EDLYPEHYRKYSDYIKgSNLD---------APEPYRIGRIKEI---F 987 edsdgsk.....ekmvhvrwfyRPeetPyikslgrafnkDirEvflsdec + ++ + ++++++++++v+ fyRPe+t +ks ++ ++ Di+ +++sde+ fh25931 988 CPKKSNGrpnetDIKIRVNKFYRPENT--HKSTPASYHADINLLYWSDEE 1035 ddvplediigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedv ++v++++++g+C+V+++ d++++ + ++ +g++++ fh25931 1036 AVVDFKAVQGRCTVEYGEDLPECVQVYS----------------MGGPNR 1069 FfCellYdpekgsFkklp<-* F++ ++Y+ + +sF+++p fh25931 1070 FYFLEAYNAKSKSFEDPP 1087 PF00145.8.ls: domain 1 of 1, from 1126 to 1584: score 137.6, E = 3.1e-38 *->fkfidLFAGiGGlrLGleqaGvefecvaanEiDkkAaktYeaNfgnd ++++d F+G+GGl+ G++qaG + ++ +a+E + Aa+ ++ N++ fh25931 1126 LRTLDVFSGCGGLSEGFHQAG-ISDTLWAIEMWDPAAQAFRLNNPGS 1171 kvpigDItki........dikeavedip....iDiLvGGfPCQdFSvAGk v D +++ + +++ ++ ++ +p+++++++L+GG+PCQ+FS G fh25931 1172 TVFTEDCNILlklvmageTTNSRGQRLPqkgdVEMLCGGPPCQGFS--G- 1218 rkGfe.dtRGt.rStLFfeiiRiikekkPKafllENVkgLlshdngrntl ++ f++ t+++ + +L + + ++P +fllENV++ +s ++ +l fh25931 1219 MNRFNsRTYSKfKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRS-MVL 1267 kviletLeelGeYsvsykvLnAsdyGvPQnReRvfivGfrkdlnlneelp k l L +G Y++++ vL A yGv+Q R+R +i + ++ l fh25931 1268 KLTLRCLVRMG-YQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLP---- 1312 lfiivlspvpefrfpkpkdalevr......................ltak l+p p f a+++ ++++ ++ ++ ++++ +++t++ fh25931 1313 -----LFPEPLHVFAPR--ACQLSvvvddkkfvsnitrlssgpfrtITVR 1355 ktikDlleepspvYnldenkynlsdklvenherrkpttkapgggyptigr +t+ Dl+e + n+ + + ++ +++++ ++ g y++i r fh25931 1356 DTMSDLPE--------VRNGASALEISYNGEPQSWFQRQLRGAQYQPILR 1397 kticeyllrnrsgryaedGnkv............................ +ic ++ + +++ + ++++ ++ ++ + + ++++ + fh25931 1398 DHICKDMSALV-------AARMrhiplapgsdwrdlpnievrlsdgtmar 1440 ............................................lvg.rt + + +++++++++++++ ++ + +++++++ ++ ++ ++l++ + fh25931 1441 klrythhdrkngrsssgalrgvcscveggssgkacdpaarqfntLIPwCL 1490 vdkveegnglsatyrksgrgeeqyvseltsAriw.ffnrlqasvleqlhp ++ n ++++y + w++f + fh25931 1491 PHTGNRHNHWAGLYGRLE---------------WdGFFSTT--------- 1516 qapktgilgkngerfrpvghpkgiRrLTpREcaRlQGFPdddFkfpgskt +++ +++gk+g+ v+hp+++R ++REcaR QGFPd+ + g+ fh25931 1517 -VTNPEPMGKQGR----VLHPEQHRVVSVRECARSQGFPDT-YRLFGNIL 1560 nnWlKeiqaYkqiGNaVpVpvaeaIakeikk<-* + +q+GNaVp+p+a+aI+ eik fh25931 1561 -------DKHRQVGNAVPPPLAKAIGLEIKL 1584 PF00145.8.fs: domain 1 of 3, from 1126 to 1217: score 54.6, E = 7.6e-15 *->fkfidLFAGiGGlrLGleqaGvefecvaanEiDkkAaktYeaNfgnd ++++d F+G+GGl+ G++qaG + ++ +a+E + Aa+ ++ N++ fh25931 1126 LRTLDVFSGCGGLSEGFHQAG-ISDTLWAIEMWDPAAQAFRLNNPGS 1171 kvpigDItki........dikeavedip....iDiLvGGfPCQdFS<-* v D +++ + +++ ++ ++ +p+++++++L+GG+PCQ+FS fh25931 1172 TVFTEDCNILlklvmageTTNSRGQRLPqkgdVEMLCGGPPCQGFS 1217 PF00145.8.fs: domain 2 of 3, from 1245 to 1304: score 31.7, E = 1.4e-08 *->kkPKafllENVkgLlshdngrntlkviletLeelGeYsvsykvLnAs ++P +fllENV++ +s ++ +lk l L +G Y++++ vL A fh25931 1245 YRPRFFLLENVRNFVSFKRS-MVLKLTLRCLVRMG-YQCTFGVLQAG 1289 dyGvPQnReRvfivG<-* yGv+Q R+R +i + fh25931 1290 QYGVAQTRRRAIILA 1304 PF00145.8.fs: domain 3 of 3, from 1509 to 1584: score 69.5, E = 6.5e-19 *->w.ffnrlqasvleqlhpqapktgilgkngerfrpvghpkgiRrLTpR w++f + +++ +++gk+g+ v+hp+++R ++R fh25931 1509 WdGFFSTT----------VTNPEPMGKQGR----VLHPEQHRVVSVR 1541 EcaRlQGFPdddFkfpgsktnnWlKeiqaYkqiGNaVpVpvaeaIakeik EcaR QGFPd+ + g+ + +q+GNaVp+p+a+aI+ eik fh25931 1542 ECARSQGFPDT-YRLFGNIL-------DKHRQVGNAVPPPLAKAIGLEIK 1583 k<-* fh25931 1584 L 1584 //