hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100311/iprscan-20100311-17583323/chunk_1/iprscan-20100311-17583323.nocrc
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Query sequence: fh25931
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00439                                                 280.4    1.4e-79   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00439    1/2     742   867 ..     1   163 []   132.3  5.2e-35
SM00439    2/2     918  1087 ..     1   163 []   148.1  9.3e-40

Alignments of top-scoring domains:
SM00439: domain 1 of 2, from 742 to 867: score 132.3, E = 5.2e-35
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      et++vGD+V v pdd             ++p+y ar+  ++e+++++
     fh25931   742    ETLEVGDCVSVIPDD------------SSKPLYLARVTALWEDSSNG 776  

                   kskkvrvrwfyRPedtvlgkarllereprlkdyafdknEvflsecPcedd
                      +++++wf+ ++dtvlg++            ++  ++++ +ec   +d
     fh25931   777 --QMFHAHWFCAGTDTVLGAT------------SDPLELFLVDEC---ED 809  

                   vpledIigkCnVlklsdyeklrpeesnsda.klerakaEERKkkgeedvF
                   ++l+ I++k++V+++++ e++ +e+ ++++++le+         ++ +++
     fh25931   810 MQLSYIHSKVKVIYKAPSENWAMEGGMDPEsLLEG---------DDGKTY 850  

                   fcellYdptkgsFkklp<-*
                   f++l+Yd+++ +F+++p   
     fh25931   851 FYQLWYDQDYARFESPP    867  

SM00439: domain 2 of 2, from 918 to 1087: score 148.1, E = 9.3e-40
                   *->etisvGDfVlvepddf.knre.e........................
                      ++++vGD V++ p++f++n++ +++ +++++++ +++  +++ ++ +
     fh25931   918    ILYRVGDGVYLPPEAFtFNIKlSspvkrprkepvdedlypehyrkys 964  

                   ...KagrnvgdepyyvarIeeifetkkgkk.....skkvrvrwfyRPedt
                   +  K+ + +++epy+++rI+eif++kk +++++++++k+rv++fyRPe+t
     fh25931   965 dyiKGSNLDAPEPYRIGRIKEIFCPKKSNGrpnetDIKIRVNKFYRPENT 1014 

                   vlgkarllereprlkdyafdknEvflsecPceddvpledIigkCnVlkls
                   +++  ++         y+ d+n++++s++  e++v++ +++g+C+V++++
     fh25931  1015 HKSTPAS---------YHADINLLYWSDE--EAVVDFKAVQGRCTVEYGE 1053 

                   dyeklrpeesnsdaklerakaEERKkkgeedvFfcellYdptkgsFkklp
                   d++++++++s+                g+++ F++ ++Y+ + +sF+++p
     fh25931  1054 DLPECVQVYSM----------------GGPNRFYFLEAYNAKSKSFEDPP 1087 

                   <-*
                      
     fh25931     -     -    

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