hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-14322933/chunk_1/iprscan-20090525-14322933.nocrc
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Query sequence: fh26309
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01852.10.fs START domain                                   161.0    2.5e-50   1
PF00620.17.fs RhoGAP domain                                  167.0    5.4e-49   1
PF00620.17.ls RhoGAP domain                                  168.9    1.2e-47   1
PF01852.10.ls START domain                                   162.9    7.8e-46   1
PF07647.7.fs SAM domain (Sterile alpha motif)                25.5      8e-07   1
PF07647.7.ls SAM domain (Sterile alpha motif)                26.0    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/1      18    85 ..     1    72 []    26.0  0.00012
PF07647.7.fs   1/1      23    85 ..     6    72 .]    25.5    8e-07
PF00620.17.fs   1/1     640   786 ..     1   155 []   167.0  5.4e-49
PF00620.17.ls   1/1     640   786 ..     1   155 []   168.9  1.2e-47
PF01852.10.fs   1/1     871  1071 ..     1   244 []   161.0  2.5e-50
PF01852.10.ls   1/1     871  1071 ..     1   244 []   162.9  7.8e-46

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 1, from 18 to 85: score 26.0, E = 0.00012
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                           +++ ++WL++ g+ +qY++ ++d ++    +   + ++++L 
     fh26309    18    KQKIEAKEACDWLRAAGF-PQYAQLYEDSQFPINIVA-VKNDHDFL- 61   

                   klalGitsvghRkkilkkiqelkqq<-*
                   + +  ++ +++R+  l+k+ ++k     
     fh26309    62 E-KDLVEPLCRRLNTLNKCASMKLD    85   

PF07647.7.fs: domain 1 of 1, from 23 to 85: score 25.5, E = 8e-07
                   *->lesvaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalG
                      +++ ++WL++ g+ +qY++ ++d ++    +   + ++++L + +  
     fh26309    23    AKEACDWLRAAGF-PQYAQLYEDSQFPINIVA-VKNDHDFL-E-KDL 65   

                   itsvghRkkilkkiqelkqq<-*
                   ++ +++R+  l+k+ ++k     
     fh26309    66 VEPLCRRLNTLNKCASMKLD    85   

PF00620.17.fs: domain 1 of 1, from 640 to 786: score 167.0, E = 5.4e-49
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++ +++l++++Ld++G++R+sG ksri +Lr+   ++  +  +
     fh26309   640    PQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQ--MNENFPENV 684  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e+++ ++vA++ K+F+R+LPePL+t++l e+f+  +++  ++e+rl+a
     fh26309   685 NYEDQSAYDVADMVKQFFRDLPEPLFTNKLSETFLH-IYQYVSKEQRLQA 733  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++++ +L ++Nr++L+ Ll +Ln V    e+N+Mt+ NLA++ +P+L++
     fh26309   734 VQAAILLLADENREVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFH 783  

                   ppdgdsad<-*
                        +++   
     fh26309   784 -----LNL    786  

PF00620.17.ls: domain 1 of 1, from 640 to 786: score 168.9, E = 1.2e-47
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++ +++l++++Ld++G++R+sG ksri +Lr+   ++  +  +
     fh26309   640    PQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQ--MNENFPENV 684  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e+++ ++vA++ K+F+R+LPePL+t++l e+f+  +++  ++e+rl+a
     fh26309   685 NYEDQSAYDVADMVKQFFRDLPEPLFTNKLSETFLH-IYQYVSKEQRLQA 733  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++++ +L ++Nr++L+ Ll +Ln V    e+N+Mt+ NLA++ +P+L++
     fh26309   734 VQAAILLLADENREVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFH 783  

                   ppdgdsad<-*
                        +++   
     fh26309   784 -----LNL    786  

PF01852.10.fs: domain 1 of 1, from 871 to 1071: score 161.0, E = 2.5e-50
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      ++ + ++q l+k+a+++++gWv+ s    + +n d   +k+  +   
     fh26309   871    TYLNHLIQGLQKEAKEKFKGWVTCS----STDNTDLAFKKV--G--- 908  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g +++++++  +v a   ++ +l++ +++r++Wd+d+     
     fh26309   909 -------DGNPLKLWKASVEVEA--PPSVVLNRVLReRHLWDEDFV---- 945  

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                     +++e+++ +      +++++yv +++a  p+++ RDfv++R+w++d  
     fh26309   946 QWKVVETLDRQ------TEIYQYVLNSMA--PHPS-RDFVVLRTWKTD-- 984  

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g +++v+ Sv++++         g vRa +  S+yliepcg g+
     fh26309   985 ---LPKGMCTLVSLSVEHEEAQ-----LLGGVRAVVMDSQYLIEPCGSGK 1026 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgaktwvatlqrlcek<-
                     s++t+++++Dlkg++P +w+ + +++ ++a++a+++ ++  +  e   
     fh26309  1027 --SRLTHICRIDLKGHSP-EWYSKGFGHLCAAEVARIRNSFQPLIAEG   1071 

                   *
                    
     fh26309     -   -    

PF01852.10.ls: domain 1 of 1, from 871 to 1071: score 162.9, E = 7.8e-46
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      ++ + ++q l+k+a+++++gWv+ s    + +n d   +k+  +   
     fh26309   871    TYLNHLIQGLQKEAKEKFKGWVTCS----STDNTDLAFKKV--G--- 908  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g +++++++  +v a   ++ +l++ +++r++Wd+d+     
     fh26309   909 -------DGNPLKLWKASVEVEA--PPSVVLNRVLReRHLWDEDFV---- 945  

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                     +++e+++ +      +++++yv +++a  p+++ RDfv++R+w++d  
     fh26309   946 QWKVVETLDRQ------TEIYQYVLNSMA--PHPS-RDFVVLRTWKTD-- 984  

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g +++v+ Sv++++         g vRa +  S+yliepcg g+
     fh26309   985 ---LPKGMCTLVSLSVEHEEAQ-----LLGGVRAVVMDSQYLIEPCGSGK 1026 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgaktwvatlqrlcek<-
                     s++t+++++Dlkg++P +w+ + +++ ++a++a+++ ++  +  e   
     fh26309  1027 --SRLTHICRIDLKGHSP-EWYSKGFGHLCAAEVARIRNSFQPLIAEG   1071 

                   *
                    
     fh26309     -   -    

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