hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04444790/chunk_1/iprscan-20080810-04444790.nocrc
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Query sequence: fh27679
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                   55.5    3.6e-16   1
PF00169.19.fs PH domain                                       48.0    3.7e-14   1
PF00621.11.ls RhoGEF domain                                   57.3    4.7e-14   1
PF00169.19.ls PH domain                                       50.0    7.2e-12   1
PF00130.12.fs Phorbol esters/diacylglycerol binding domain    24.9    3.8e-06   1
PF00130.12.ls Phorbol esters/diacylglycerol binding domain    26.8    1.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00130.12.fs   1/1     289   339 ..     1    55 []    24.9  3.8e-06
PF00130.12.ls   1/1     289   339 ..     1    55 []    26.8  1.7e-05
PF00621.11.fs   1/1     493   685 ..     1   207 []    55.5  3.6e-16
PF00621.11.ls   1/1     493   685 ..     1   207 []    57.3  4.7e-14
PF00169.19.fs   1/1     727   828 ..     1    92 []    48.0  3.7e-14
PF00169.19.ls   1/1     727   828 ..     1    92 []    50.0  7.2e-12

Alignments of top-scoring domains:
PF00130.12.fs: domain 1 of 1, from 289 to 339: score 24.9, E = 3.8e-06
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H F       +p +C++C++++     k ++ C++C   vHk C e 
     fh27679   289    HTFSSI-PVVGPISCSQCMKPF---TNKDAYTCANCSAFVHKGCRES 331  

                   VppeCgcg<-*
                   ++++ + +   
     fh27679   332 LASCAKVK    339  

PF00130.12.ls: domain 1 of 1, from 289 to 339: score 26.8, E = 1.7e-05
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H F       +p +C++C++++     k ++ C++C   vHk C e 
     fh27679   289    HTFSSI-PVVGPISCSQCMKPF---TNKDAYTCANCSAFVHKGCRES 331  

                   VppeCgcg<-*
                   ++++ + +   
     fh27679   332 LASCAKVK    339  

PF00621.11.fs: domain 1 of 1, from 493 to 685: score 55.5, E = 3.6e-16
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++El++TE   vr+L i + vy + + +       l+ ++ +e +F
     fh27679   493    VIYELMQTEFHHVRTLKIMSGVYSQGMMADL-----LFEQQMVEKLF 534  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ +++++h++F++ ++ +r  +s  +d  ek +     r+Gd++   +
     fh27679   535 PCLDELISIHSQFFQ-RILERKKES-LVDKSEKNF--LIKRIGDVLVNQF 580  

                   .....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn
                   ++++ ++  + Yg++c +++ +++  ++l   a+   F+ f+++++ ss 
     fh27679   581 sgenaERLKKTYGKFCGQHNQSVNYFKDLY--AKDKRFQAFVKKKMSSSV 628  

                   tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk
                           +l+++  +l   qRi++Yp L + +L  t+      e edL 
     fh27679   629 VR------RLGIPECILLVTQRITKYPVLFQRILQCTKD--NEVEQEDLA 670  

                   kaldalqdlaksiNe<-*
                   ++l++++d++  ++    
     fh27679   671 QSLSLVKDVIGAVDS    685  

PF00621.11.ls: domain 1 of 1, from 493 to 685: score 57.3, E = 4.7e-14
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++El++TE   vr+L i + vy + + +       l+ ++ +e +F
     fh27679   493    VIYELMQTEFHHVRTLKIMSGVYSQGMMADL-----LFEQQMVEKLF 534  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ +++++h++F++ ++ +r  +s  +d  ek +     r+Gd++   +
     fh27679   535 PCLDELISIHSQFFQ-RILERKKES-LVDKSEKNF--LIKRIGDVLVNQF 580  

                   .....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn
                   ++++ ++  + Yg++c +++ +++  ++l   a+   F+ f+++++ ss 
     fh27679   581 sgenaERLKKTYGKFCGQHNQSVNYFKDLY--AKDKRFQAFVKKKMSSSV 628  

                   tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk
                           +l+++  +l   qRi++Yp L + +L  t+      e edL 
     fh27679   629 VR------RLGIPECILLVTQRITKYPVLFQRILQCTKD--NEVEQEDLA 670  

                   kaldalqdlaksiNe<-*
                   ++l++++d++  ++    
     fh27679   671 QSLSLVKDVIGAVDS    685  

PF00169.19.fs: domain 1 of 1, from 727 to 828: score 48.0, E = 3.7e-14
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk
                      +++ G +++k + ++ k++ +vL +d L++ ++k+++    + + + 
     fh27679   727    LVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDqkyifaslDQKS 773  

                   gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka
                    +i+L+++ v++v +  +k  F i++++ ++e ++++a+s+eer++W++ 
     fh27679   774 TVISLKKLIVREVAHE-EKGLFLISMgMTdpEMVEVHASSKEERNSWIQI 822  

                   iqsair<-*
                   iq+ i    
     fh27679   823 IQDTIN    828  

PF00169.19.ls: domain 1 of 1, from 727 to 828: score 50.0, E = 7.2e-12
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk
                      +++ G +++k + ++ k++ +vL +d L++ ++k+++    + + + 
     fh27679   727    LVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDqkyifaslDQKS 773  

                   gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka
                    +i+L+++ v++v +  +k  F i++++ ++e ++++a+s+eer++W++ 
     fh27679   774 TVISLKKLIVREVAHE-EKGLFLISMgMTdpEMVEVHASSKEERNSWIQI 822  

                   iqsair<-*
                   iq+ i    
     fh27679   823 IQDTIN    828  

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