hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04444790/chunk_1/iprscan-20080810-04444790.nocrc
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Query sequence: fh27679
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 224.1    1.2e-62   1
SM00233                                                  50.1      3e-10   1
SM00109                                                  29.0    0.00064   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00109     1/1     289   335 ..     1    61 []    29.0  0.00064
SM00325     1/1     493   685 ..     1   211 []   224.1  1.2e-62
SM00233     1/1     727   830 ..     1    82 []    50.1    3e-10

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 289 to 335: score 29.0, E = 0.00064
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+  ++ +p  C++C+k+    +       ++ C +C   +Hk C
     fh27679   289    HTFSSIPVvGPISCSQCMKPFTNKD-------AYTCANCSAFVHKGC 328  

                   aekvpaqshksglsC<-*
                    e ++        sC   
     fh27679   329 RESLA--------SC    335  

SM00325: domain 1 of 1, from 493 to 685: score 224.1, E = 1.2e-62
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++EL+qTE+++Vr+Lki+  v+ + ++ ++      l+ ++ v++l
     fh27679   493    VIYELMQTEFHHVRTLKIMSGVYSQGMMADL------LFEQQMVEKL 533  

                   FgpNieeiyefHrrFLdeLeerveewllskdl.Ksernsviedsgerigd
                   F+ +++e++++H++F++++ er +e+l    ++Kse+n++i+ +g+++ +
     fh27679   534 FP-CLDELISIHSQFFQRILERKKESL----VdKSEKNFLIKRIGDVLVN 578  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   +F+++ +ae+++k+Y+++c +h+++++ +k L+  +k+++Fq+f+k+ +s
     fh27679   579 QFSGE-NAERLKKTYGKFCGQHNQSVNYFKDLY--AKDKRFQAFVKKKMS 625  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +++ r     rl+++++++++ QR+tkYp L++++l++t+++  ++edL 
     fh27679   626 SSVVR-----RLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDLA 670  

                   kAleaikelasqvNe<-*
                   + l ++k+++ +v+    
     fh27679   671 QSLSLVKDVIGAVDS    685  

SM00233: domain 1 of 1, from 727 to 830: score 50.1, E = 3e-10
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk..........kpk
                      +++ G +  k   ++ k++ +vL ++ L++ ++k+++    + + ++
     fh27679   727    LVRDGSVFLKNaAgRLKEVQAVLLTDILVFLQEKdqkyifasldQKS 773  

                   gsipLsgcsvre.p.....cFeivt.dr...tlllqAeseeereeWveal
                    +i+L++++vre ++++++ F i+++  +++  +++A+s+eer++W++ +
     fh27679   774 TVISLKKLIVREvAheekgLFLISMgMTdpeMVEVHASSKEERNSWIQII 823  

                   qsaiaka<-*
                   q+ i+ +   
     fh27679   824 QDTINTL    830  

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