hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09074995/chunk_1/iprscan-20090618-09074995.nocrc
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Query sequence: fj00071s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 186.4    2.7e-51   8
SM00349                                                  75.4    6.9e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1     230   290 ..     1    62 []    75.4  6.9e-18
SM00355      1/8     430   451 ..     1    23 []     5.0       87
SM00355      2/8     485   507 ..     1    23 []    23.0    0.041
SM00355      3/8     514   536 ..     1    23 []    26.4   0.0038
SM00355      4/8     542   564 ..     1    23 []    23.6    0.027
SM00355      5/8     570   592 ..     1    23 []    27.0   0.0026
SM00355      6/8     598   620 ..     1    23 []    25.4   0.0078
SM00355      7/8     626   648 ..     1    23 []    27.3   0.0022
SM00355      8/8     654   677 ..     1    23 []    28.6  0.00087

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 230 to 290: score 75.4, E = 6.9e-18
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V+F+DV ++Fs  EWe+L+ +Q++LY++ M+ NY+ L S++ +++ +
   fj00071s1   230    VAFDDVSIYFSTPEWEKLEEWQKELYKNIMKGNYESLISMD-YAINQ 275  

                   pdliskLEqgeEpwi<-*
                   pd++s+ + + E  +   
   fj00071s1   276 PDVLSQIQPEGEHNT    290  

SM00355: domain 1 of 8, from 430 to 451: score 5.0, E = 87
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk   s++ L  H+ +H   
   fj00071s1   430    FSCHH-CGKN-LSQdMLLTHQCSH    451  

SM00355: domain 2 of 8, from 485 to 507: score 23.0, E = 0.041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp+ C ++f++++ L+ H+rvH   
   fj00071s1   485    PTCPH-CARTFTHPsRLTYHLRVH    507  

SM00355: domain 3 of 8, from 514 to 536: score 26.4, E = 0.0038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp  C+k+f ++  L+ H r H   
   fj00071s1   514    FPCPD-CPKRFADQaRLTSHRRAH    536  

SM00355: domain 4 of 8, from 542 to 564: score 23.6, E = 0.027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cg+sfs k +L  H+r H   
   fj00071s1   542    FRCAQ-CGRSFSLKiSLLLHQRGH    564  

SM00355: domain 5 of 8, from 570 to 592: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cg  f+ ++aL+rH+++H   
   fj00071s1   570    FSCPQ-CGIDFNGHsALIRHQMIH    592  

SM00355: domain 6 of 8, from 598 to 620: score 25.4, E = 0.0078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  C+ksf +k++L +H r H   
   fj00071s1   598    YPCTD-CSKSFMRKeHLLNHRRLH    620  

SM00355: domain 7 of 8, from 626 to 648: score 27.3, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cgksf +k++L +H+r+H   
   fj00071s1   626    FSCPH-CGKSFIRKhHLMKHQRIH    648  

SM00355: domain 8 of 8, from 654 to 677: score 28.6, E = 0.00087
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ Cg+sf+ k+ Lk H+r+ H   
   fj00071s1   654    YPCSY-CGRSFRYKqTLKDHLRsGH    677  

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