hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09135840/chunk_1/iprscan-20090618-09135840.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj00169 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 601.5 6.9e-178 18 PF00096.16.fs Zinc finger, C2H2 type 573.4 2e-169 18 PF01096.9.fs Transcription factor S-II (TFIIS) 98.5 8.5e-30 18 PF01352.17.fs KRAB box 90.7 3.9e-25 1 PF01352.17.ls KRAB box 92.7 1e-24 1 PF01286.9.fs XPA protein N-terminal 86.4 7.1e-24 17 PF07754.2.fs Domain of unknown function (DUF1610) 54.2 1.6e-13 17 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.6 1.1e-05 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 19 59 .. 1 41 [] 92.7 1e-24 PF01352.17.fs 1/1 19 59 .. 1 41 [] 90.7 3.9e-25 PF00096.16.fs 2/18 318 340 .. 1 24 [] 28.8 6.2e-06 PF00096.16.ls 2/18 318 340 .. 1 24 [] 30.8 4.4e-06 PF00096.16.ls 3/18 346 368 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 3/18 346 368 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 4/18 374 396 .. 1 24 [] 35.3 1.9e-07 PF00096.16.fs 4/18 374 396 .. 1 24 [] 33.4 4.6e-07 PF00096.16.ls 5/18 402 424 .. 1 24 [] 36.7 7.5e-08 PF00096.16.fs 5/18 402 424 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 6/18 430 452 .. 1 24 [] 28.0 3.2e-05 PF00096.16.fs 6/18 430 452 .. 1 24 [] 26.0 3.1e-05 PF00096.16.ls 7/18 458 480 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 7/18 458 480 .. 1 24 [] 34.0 3.3e-07 PF00096.16.fs 8/18 486 508 .. 1 24 [] 33.5 4.2e-07 PF00096.16.ls 8/18 486 508 .. 1 24 [] 35.5 1.7e-07 PF00096.16.ls 9/18 514 536 .. 1 24 [] 33.7 6.1e-07 PF00096.16.fs 9/18 514 536 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 10/18 542 564 .. 1 24 [] 37.1 5.5e-08 PF00096.16.fs 10/18 542 564 .. 1 24 [] 35.2 1.6e-07 PF00096.16.ls 11/18 570 592 .. 1 24 [] 31.4 2.9e-06 PF00096.16.fs 11/18 570 592 .. 1 24 [] 29.4 4.4e-06 PF00096.16.ls 12/18 598 620 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 12/18 598 620 .. 1 24 [] 32.9 6e-07 PF00096.16.fs 13/18 626 648 .. 1 24 [] 35.8 1.2e-07 PF00096.16.ls 13/18 626 648 .. 1 24 [] 37.7 3.6e-08 PF00096.16.ls 14/18 654 676 .. 1 24 [] 36.9 6.3e-08 PF00096.16.fs 14/18 654 676 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 15/18 682 704 .. 1 24 [] 30.2 6.7e-06 PF00096.16.fs 15/18 682 704 .. 1 24 [] 28.2 8.6e-06 PF00096.16.ls 16/18 710 732 .. 1 24 [] 33.9 5.2e-07 PF00096.16.fs 16/18 710 732 .. 1 24 [] 31.9 1.1e-06 PF00096.16.fs 17/18 738 760 .. 1 24 [] 38.5 2.2e-08 PF00096.16.ls 17/18 738 760 .. 1 24 [] 40.4 5.5e-09 PF00096.16.fs 18/18 766 788 .. 1 24 [] 36.1 9.8e-08 PF00096.16.ls 18/18 766 788 .. 1 24 [] 38.0 2.9e-08 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 19 to 59: score 92.7, E = 1e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaV Ft+EE +lL+paQr+LYrdVM EN++nL+S+g fj00169 19 VTFKDVAVAFTEEELGLLGPAQRKLYRDVMVENFRNLLSVG 59 PF01352.17.fs: domain 1 of 1, from 19 to 59: score 90.7, E = 3.9e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVaV Ft+EE +lL+paQr+LYrdVM EN++nL+S+g fj00169 19 VTFKDVAVAFTEEELGLLGPAQRKLYRDVMVENFRNLLSVG 59 PF00096.16.fs: domain 2 of 18, from 318 to 340: score 28.8, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ +Cgk Fs+ ++L++H+++H fj00169 318 LKCD-ECGKEFSQGAHLQTHQKVH 340 PF00096.16.ls: domain 2 of 18, from 318 to 340: score 30.8, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ +Cgk Fs+ ++L++H+++H fj00169 318 LKCD-ECGKEFSQGAHLQTHQKVH 340 PF00096.16.ls: domain 3 of 18, from 346 to 368: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+s L+ H ++H fj00169 346 YKCK-QCGKGFSRRSALNVHCKVH 368 PF00096.16.fs: domain 3 of 18, from 346 to 368: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+s L+ H ++H fj00169 346 YKCK-QCGKGFSRRSALNVHCKVH 368 PF00096.16.ls: domain 4 of 18, from 374 to 396: score 35.3, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++Fs+ s+L+ H+r H fj00169 374 YNCE-ECGRAFSQASHLQDHQRLH 396 PF00096.16.fs: domain 4 of 18, from 374 to 396: score 33.4, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++Fs+ s+L+ H+r H fj00169 374 YNCE-ECGRAFSQASHLQDHQRLH 396 PF00096.16.ls: domain 5 of 18, from 402 to 424: score 36.7, E = 7.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ CgksFsr+s+L++H+r+H fj00169 402 FKCD-ACGKSFSRNSHLQSHQRVH 424 PF00096.16.fs: domain 5 of 18, from 402 to 424: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ CgksFsr+s+L++H+r+H fj00169 402 FKCD-ACGKSFSRNSHLQSHQRVH 424 PF00096.16.ls: domain 6 of 18, from 430 to 452: score 28.0, E = 3.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F +snL H+r+H fj00169 430 YKCE-ECGKGFICSSNLYIHQRVH 452 PF00096.16.fs: domain 6 of 18, from 430 to 452: score 26.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F +snL H+r+H fj00169 430 YKCE-ECGKGFICSSNLYIHQRVH 452 PF00096.16.ls: domain 7 of 18, from 458 to 480: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+s+L++H+ +H fj00169 458 YKCE-ECGKGFSRPSSLQAHQGVH 480 PF00096.16.fs: domain 7 of 18, from 458 to 480: score 34.0, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+s+L++H+ +H fj00169 458 YKCE-ECGKGFSRPSSLQAHQGVH 480 PF00096.16.fs: domain 8 of 18, from 486 to 508: score 33.5, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ +snL++H+r+H fj00169 486 YICT-VCGKGFTLSSNLQAHQRVH 508 PF00096.16.ls: domain 8 of 18, from 486 to 508: score 35.5, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ +snL++H+r+H fj00169 486 YICT-VCGKGFTLSSNLQAHQRVH 508 PF00096.16.ls: domain 9 of 18, from 514 to 536: score 33.7, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+r+s+++ Hl +H fj00169 514 YKCN-ECGKSFRRNSHYQVHLVVH 536 PF00096.16.fs: domain 9 of 18, from 514 to 536: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+r+s+++ Hl +H fj00169 514 YKCN-ECGKSFRRNSHYQVHLVVH 536 PF00096.16.ls: domain 10 of 18, from 542 to 564: score 37.1, E = 5.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s L+ H++ H fj00169 542 YKCE-ICGKGFSQSSYLQIHQKAH 564 PF00096.16.fs: domain 10 of 18, from 542 to 564: score 35.2, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s L+ H++ H fj00169 542 YKCE-ICGKGFSQSSYLQIHQKAH 564 PF00096.16.ls: domain 11 of 18, from 570 to 592: score 31.4, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+++s L+ H+ +H fj00169 570 FKCE-ECGQGFNQSSRLQIHQLIH 592 PF00096.16.fs: domain 11 of 18, from 570 to 592: score 29.4, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+++s L+ H+ +H fj00169 570 FKCE-ECGQGFNQSSRLQIHQLIH 592 PF00096.16.ls: domain 12 of 18, from 598 to 620: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+++Lk H r+H fj00169 598 YKCE-ECGKGFSRRADLKIHCRIH 620 PF00096.16.fs: domain 12 of 18, from 598 to 620: score 32.9, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fsr+++Lk H r+H fj00169 598 YKCE-ECGKGFSRRADLKIHCRIH 620 PF00096.16.fs: domain 13 of 18, from 626 to 648: score 35.8, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F++ snL +H+r+H fj00169 626 YNCE-ECGKVFRQASNLLAHQRVH 648 PF00096.16.ls: domain 13 of 18, from 626 to 648: score 37.7, E = 3.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F++ snL +H+r+H fj00169 626 YNCE-ECGKVFRQASNLLAHQRVH 648 PF00096.16.ls: domain 14 of 18, from 654 to 676: score 36.9, E = 6.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF r+++L++H+++H fj00169 654 FKCE-ECGKSFGRSAHLQAHQKVH 676 PF00096.16.fs: domain 14 of 18, from 654 to 676: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF r+++L++H+++H fj00169 654 FKCE-ECGKSFGRSAHLQAHQKVH 676 PF00096.16.ls: domain 15 of 18, from 682 to 704: score 30.2, E = 6.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ + nL +H+r+H fj00169 682 YKCD-ECGKGFKWSLNLDMHQRVH 704 PF00096.16.fs: domain 15 of 18, from 682 to 704: score 28.2, E = 8.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ + nL +H+r+H fj00169 682 YKCD-ECGKGFKWSLNLDMHQRVH 704 PF00096.16.ls: domain 16 of 18, from 710 to 732: score 33.9, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fs+ s+L+ H+ +H fj00169 710 YKCG-ECGKYFSQASSLQLHQSVH 732 PF00096.16.fs: domain 16 of 18, from 710 to 732: score 31.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fs+ s+L+ H+ +H fj00169 710 YKCG-ECGKYFSQASSLQLHQSVH 732 PF00096.16.fs: domain 17 of 18, from 738 to 760: score 38.5, E = 2.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s+L++H+r+H fj00169 738 YKCD-VCGKVFSRSSQLQSHQRVH 760 PF00096.16.ls: domain 17 of 18, from 738 to 760: score 40.4, E = 5.5e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s+L++H+r+H fj00169 738 YKCD-VCGKVFSRSSQLQSHQRVH 760 PF00096.16.fs: domain 18 of 18, from 766 to 788: score 36.1, E = 9.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs +snL+ H r+H fj00169 766 YKCE-ICGKSFSWRSNLTVHHRIH 788 PF00096.16.ls: domain 18 of 18, from 766 to 788: score 38.0, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs +snL+ H r+H fj00169 766 YKCE-ICGKSFSWRSNLTVHHRIH 788 //