hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09135840/chunk_1/iprscan-20090618-09135840.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj00169 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 512.8 1.5e-149 19 SM00349 103.7 2.2e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 19 78 .. 1 62 [] 103.7 2.2e-26 SM00355 1/19 263 283 .. 1 23 [] 10.3 22 SM00355 2/19 291 313 .. 1 23 [] 0.1 3.1e+02 SM00355 3/19 318 340 .. 1 23 [] 27.8 0.0015 SM00355 4/19 346 368 .. 1 23 [] 31.1 0.00015 SM00355 5/19 374 396 .. 1 23 [] 29.2 0.00058 SM00355 6/19 402 424 .. 1 23 [] 29.9 0.00036 SM00355 7/19 430 452 .. 1 23 [] 25.0 0.01 SM00355 8/19 458 480 .. 1 23 [] 29.9 0.00035 SM00355 9/19 486 508 .. 1 23 [] 28.6 0.00087 SM00355 10/19 514 536 .. 1 23 [] 28.7 0.00082 SM00355 11/19 542 564 .. 1 23 [] 29.3 0.00051 SM00355 12/19 570 592 .. 1 23 [] 26.7 0.0032 SM00355 13/19 598 620 .. 1 23 [] 31.4 0.00012 SM00355 14/19 626 648 .. 1 23 [] 30.7 0.00021 SM00355 15/19 654 676 .. 1 23 [] 30.6 0.00022 SM00355 16/19 682 704 .. 1 23 [] 29.1 0.00061 SM00355 17/19 710 732 .. 1 23 [] 28.0 0.0013 SM00355 18/19 738 760 .. 1 23 [] 34.3 1.7e-05 SM00355 19/19 766 788 .. 1 23 [] 32.4 6.3e-05 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 19 to 78: score 103.7, E = 2.2e-26 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVAV F++EE ++L paQr LYRdVM EN++nL S+G+++++ fj00169 19 VTFKDVAVAFTEEELGLLGPAQRKLYRDVMVENFRNLLSVGHPPFK- 64 pdliskLEqgeEpwi<-* ++s E+ e +wi fj00169 65 -QDVSPIERNEQLWI 78 SM00355: domain 1 of 19, from 263 to 283: score 10.3, E = 22 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k fs+ +++ H++ fj00169 263 YQCNE-CKKPFSDLsSFDLHQQ-- 283 SM00355: domain 2 of 19, from 291 to 313: score 0.1, E = 3.1e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + gk f+ + L H++vH fj00169 291 LTCVE-RGKGFCYSpVLPVHQKVH 313 SM00355: domain 3 of 19, from 318 to 340: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk fs+ +L+ H++vH fj00169 318 LKCDE-CGKEFSQGaHLQTHQKVH 340 SM00355: domain 4 of 19, from 346 to 368: score 31.1, E = 0.00015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+++aL+ H +vH fj00169 346 YKCKQ-CGKGFSRRsALNVHCKVH 368 SM00355: domain 5 of 19, from 374 to 396: score 29.2, E = 0.00058 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+ fs++++L+ H+r H fj00169 374 YNCEE-CGRAFSQAsHLQDHQRLH 396 SM00355: domain 6 of 19, from 402 to 424: score 29.9, E = 0.00036 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ Cgksfs+ ++L+ H+rvH fj00169 402 FKCDA-CGKSFSRNsHLQSHQRVH 424 SM00355: domain 7 of 19, from 430 to 452: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++L H+rvH fj00169 430 YKCEE-CGKGFICSsNLYIHQRVH 452 SM00355: domain 8 of 19, from 458 to 480: score 29.9, E = 0.00035 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs++++L+ H+ vH fj00169 458 YKCEE-CGKGFSRPsSLQAHQGVH 480 SM00355: domain 9 of 19, from 486 to 508: score 28.6, E = 0.00087 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ ++L+ H+rvH fj00169 486 YICTV-CGKGFTLSsNLQAHQRVH 508 SM00355: domain 10 of 19, from 514 to 536: score 28.7, E = 0.00082 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksf++ ++++ H+ vH fj00169 514 YKCNE-CGKSFRRNsHYQVHLVVH 536 SM00355: domain 11 of 19, from 542 to 564: score 29.3, E = 0.00051 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+i Cgk fs+ + L+ H++ H fj00169 542 YKCEI-CGKGFSQSsYLQIHQKAH 564 SM00355: domain 12 of 19, from 570 to 592: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ f++ + L+ H+ +H fj00169 570 FKCEE-CGQGFNQSsRLQIHQLIH 592 SM00355: domain 13 of 19, from 598 to 620: score 31.4, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs++ +Lk H r+H fj00169 598 YKCEE-CGKGFSRRaDLKIHCRIH 620 SM00355: domain 14 of 19, from 626 to 648: score 30.7, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk+f+++++L H+rvH fj00169 626 YNCEE-CGKVFRQAsNLLAHQRVH 648 SM00355: domain 15 of 19, from 654 to 676: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgksf + +L+ H++vH fj00169 654 FKCEE-CGKSFGRSaHLQAHQKVH 676 SM00355: domain 16 of 19, from 682 to 704: score 29.1, E = 0.00061 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ +L H+rvH fj00169 682 YKCDE-CGKGFKWSlNLDMHQRVH 704 SM00355: domain 17 of 19, from 710 to 732: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk fs++++L+ H+ vH fj00169 710 YKCGE-CGKYFSQAsSLQLHQSVH 732 SM00355: domain 18 of 19, from 738 to 760: score 34.3, E = 1.7e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++L+ H+rvH fj00169 738 YKCDV-CGKVFSRSsQLQSHQRVH 760 SM00355: domain 19 of 19, from 766 to 788: score 32.4, E = 6.3e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+i Cgksfs++++L+ H r+H fj00169 766 YKCEI-CGKSFSWRsNLTVHHRIH 788 //