hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090722/iprscan-20090722-10320984/chunk_1/iprscan-20090722-10320984.nocrc
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Query sequence: fj00226s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.ls Bromodomain                                 307.3    2.6e-89   2
PF00439.15.fs Bromodomain                                 303.3      4e-88   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00439.15.fs   1/2      77   166 ..     1    92 []   159.3  9.3e-45
PF00439.15.ls   1/2      77   166 ..     1    92 []   161.3  2.4e-45
PF00439.15.fs   2/2     370   459 ..     1    92 []   144.1  3.6e-40
PF00439.15.ls   2/2     370   459 ..     1    92 []   146.0  9.1e-41

Alignments of top-scoring domains:
PF00439.15.fs: domain 1 of 2, from 77 to 166: score 159.3, E = 9.3e-45
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l++ll+ vl+ l++h  +a+pf +pV+++kl+lPDYY+iIk+PMD++
   fj00226s1    77    LQYLLRVVLKTLWKHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMG 122  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TIkk+l+n++Y ++++e+++Dfn mf+N+++YN+p+ +++ +A+    
   fj00226s1   123 TIKKRLENNYY-WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA    166  

PF00439.15.ls: domain 1 of 2, from 77 to 166: score 161.3, E = 2.4e-45
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l++ll+ vl+ l++h  +a+pf +pV+++kl+lPDYY+iIk+PMD++
   fj00226s1    77    LQYLLRVVLKTLWKHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMG 122  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TIkk+l+n++Y ++++e+++Dfn mf+N+++YN+p+ +++ +A+    
   fj00226s1   123 TIKKRLENNYY-WNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA    166  

PF00439.15.fs: domain 2 of 2, from 370 to 459: score 144.1, E = 3.6e-40
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +++ +lk++ a++++  +a+pf++pV++ +l+l+DY +iIk+PMD++
   fj00226s1   370    CCSGILKEMFAKKHAA-YAWPFYKPVDVEALGLHDYCDIIKHPMDMS 415  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TIk kl+ ++Y ++++eF aD++LmfsN+++YN+pd+ev+ +A+k   
   fj00226s1   416 TIKSKLEAREY-RDAQEFGADVRLMFSNCYKYNPPDHEVVAMARK    459  

PF00439.15.ls: domain 2 of 2, from 370 to 459: score 146.0, E = 9.1e-41
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +++ +lk++ a++++  +a+pf++pV++ +l+l+DY +iIk+PMD++
   fj00226s1   370    CCSGILKEMFAKKHAA-YAWPFYKPVDVEALGLHDYCDIIKHPMDMS 415  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TIk kl+ ++Y ++++eF aD++LmfsN+++YN+pd+ev+ +A+k   
   fj00226s1   416 TIKSKLEAREY-RDAQEFGADVRLMFSNCYKYNPPDHEVVAMARK    459  

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