hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090722/iprscan-20090722-10320984/chunk_1/iprscan-20090722-10320984.nocrc
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Query sequence: fj00226s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                 349.2   2.7e-100   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00297    1/2      70   180 ..     1   118 []   183.0  2.8e-50
SM00297    2/2     364   473 ..     1   118 []   166.1  3.4e-45

Alignments of top-scoring domains:
SM00297: domain 1 of 2, from 70 to 180: score 183.0, E = 2.8e-50
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++++ ++lq ll+++l+ l +h        ++awpF++pvd+++L++
   fj00226s1    70    PKRqTNQLQYLLRVVLKTLWKH--------QFAWPFQQPVDAVKLNL 108  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDYy+iIk+PMD++tIkk+len++Y++++e ++Dfn mf+N+++YN+p+ 
   fj00226s1   109 PDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGD 158  

                   evykdAkkLeklfeeklkelpp<-*
                   ++  +A+ Leklf++k++elp    
   fj00226s1   159 DIVLMAEALEKLFLQKINELPT    180  

SM00297: domain 2 of 2, from 364 to 473: score 166.1, E = 3.4e-45
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                       ++++k ++ +lk++++k++           +awpF++pvd+  Lg+
   fj00226s1   364    VSEqLKCCSGILKEMFAKKHAA---------YAWPFYKPVDVEALGL 401  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   +DY+diIk+PMD++tIk kle ++Y++++eF aD++LmfsN+++YN+pd+
   fj00226s1   402 HDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDH 451  

                   evykdAkkLeklfeeklkelpp<-*
                   ev  +A+kL+++fe +++++p+   
   fj00226s1   452 EVVAMARKLQDVFEMRFAKMPD    473  

//