hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-04503765/chunk_1/iprscan-20080810-04503765.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj00292 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 314.7 1.6e-91 6 PF00028.8.ls Cadherin domain 307.0 3.1e-89 5 PF08266.2.fs Cadherin-like 187.5 1.7e-54 1 PF08266.2.ls Cadherin-like 189.5 7.3e-54 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/1 47 130 .. 1 84 [] 187.5 1.7e-54 PF08266.2.ls 1/1 47 130 .. 1 84 [] 189.5 7.3e-54 PF00028.8.fs 2/6 156 251 .. 1 107 [] 36.6 7.1e-10 PF00028.8.ls 1/5 156 251 .. 1 107 [] 38.4 2.2e-08 PF00028.8.ls 2/5 265 356 .. 1 107 [] 91.4 2.6e-24 PF00028.8.fs 3/6 265 356 .. 1 107 [] 89.6 4.6e-25 PF00028.8.fs 4/6 370 461 .. 1 107 [] 56.2 1.7e-15 PF00028.8.ls 3/5 370 461 .. 1 107 [] 58.1 2.7e-14 PF00028.8.fs 5/6 475 571 .. 1 107 [] 69.7 2.3e-19 PF00028.8.ls 4/5 475 571 .. 1 107 [] 71.5 2.4e-18 PF00028.8.ls 5/5 593 683 .. 1 107 [] 47.6 3.8e-11 PF00028.8.fs 6/6 600 683 .. 9 107 .] 52.0 2.7e-14 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 1, from 47 to 130: score 187.5, E = 1.7e-54 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF +qirYS+pEE+e+GsfVGN++KDLGL++qeLa+ g+RivS+g+ q+F fj00292 47 AQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLF 93 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L++++RiDREeLC+qs++C++++++l+E+ fj00292 94 SLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVED 130 PF08266.2.ls: domain 1 of 1, from 47 to 130: score 189.5, E = 7.3e-54 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF +qirYS+pEE+e+GsfVGN++KDLGL++qeLa+ g+RivS+g+ q+F fj00292 47 AQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLF 93 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L++++RiDREeLC+qs++C++++++l+E+ fj00292 94 SLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVED 130 PF00028.8.fs: domain 2 of 6, from 156 to 251: score 36.6, E = 7.1e-10 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ + Ena++ ++ + ++D+D g N+ ++++g++ +F+ fj00292 156 LEVKILENAAPSSRFPLMEVYDPD--VGMNSLQGFKLSGNS---HFS 197 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d ++ + +++ + LDRE Y+L++ A+D+ g p fj00292 198 VDVQSEAHGPKypeLVLEGTLDREGE--AVYRLVLTAMDG-------GDP 238 plsstatvtitVl<-* +ss+a++ +tVl fj00292 239 VRSSVAQILVTVL 251 PF00028.8.ls: domain 1 of 5, from 156 to 251: score 38.4, E = 2.2e-08 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ + Ena++ ++ + ++D+D g N+ ++++g++ +F+ fj00292 156 LEVKILENAAPSSRFPLMEVYDPD--VGMNSLQGFKLSGNS---HFS 197 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d ++ + +++ + LDRE Y+L++ A+D+ g p fj00292 198 VDVQSEAHGPKypeLVLEGTLDREGE--AVYRLVLTAMDG-------GDP 238 plsstatvtitVl<-* +ss+a++ +tVl fj00292 239 VRSSVAQILVTVL 251 PF00028.8.ls: domain 2 of 5, from 265 to 356: score 91.4, E = 2.6e-24 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +svpEn pvGt+vl vtAtD D +g +g ++Ys+++ ++ +++ fj00292 265 YRVSVPENLPVGTPVLAVTATDQD--EGVHGEVTYSFVKITEkiSQI 309 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F ++ tG+ ist ++LD+E + YeL veA+D+ p+ fj00292 310 FCLNVLTGE----ISTSANLDYEDS--SFYELGVEARDG---------PG 344 lsstatvtitVl<-* l+++a v it+l fj00292 345 LRDRAKVLITIL 356 PF00028.8.fs: domain 3 of 6, from 265 to 356: score 89.6, E = 4.6e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +svpEn pvGt+vl vtAtD D +g +g ++Ys+++ ++ +++ fj00292 265 YRVSVPENLPVGTPVLAVTATDQD--EGVHGEVTYSFVKITEkiSQI 309 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F ++ tG+ ist ++LD+E + YeL veA+D+ p+ fj00292 310 FCLNVLTGE----ISTSANLDYEDS--SFYELGVEARDG---------PG 344 lsstatvtitVl<-* l+++a v it+l fj00292 345 LRDRAKVLITIL 356 PF00028.8.fs: domain 4 of 6, from 370 to 461: score 56.2, E = 1.7e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s ++ E ap+Gt ++ +++ D+D +g+Ng ++ si + p F+ fj00292 370 GSRTIAESAPPGTVIALFQVFDRD--SGLNGLVTCSIPRSLP---FE 411 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ G + + t + LDREe Y++tv AtD g+ppls fj00292 412 LEKSVGNYYR-LVTNAALDREEV--FLYNITVTATDK-------GTPPLS 451 statvtitVl<-* +++ + +V fj00292 452 TETIISLNVA 461 PF00028.8.ls: domain 3 of 5, from 370 to 461: score 58.1, E = 2.7e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s ++ E ap+Gt ++ +++ D+D +g+Ng ++ si + p F+ fj00292 370 GSRTIAESAPPGTVIALFQVFDRD--SGLNGLVTCSIPRSLP---FE 411 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ G + + t + LDREe Y++tv AtD g+ppls fj00292 412 LEKSVGNYYR-LVTNAALDREEV--FLYNITVTATDK-------GTPPLS 451 statvtitVl<-* +++ + +V fj00292 452 TETIISLNVA 461 PF00028.8.fs: domain 5 of 6, from 475 to 571: score 69.7, E = 2.3e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ys+ v En p+G ++ +v+A D+D +N++++Ys+ ++ ++ + fj00292 475 YSVYVLENNPRGASIFSVNALDPD--VDQNAQVSYSLAEDTLqgapl 519 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG ++ ++ D+E+ + L+v A+D+ g fj00292 520 SSYVSINSDTGI----LYALRSFDYEQL--RDLQLWVTASDS-------G 556 gpplsstatvtitVl<-* pplss +++ Vl fj00292 557 DPPLSSNVSLSLFVL 571 PF00028.8.ls: domain 4 of 5, from 475 to 571: score 71.5, E = 2.4e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ys+ v En p+G ++ +v+A D+D +N++++Ys+ ++ ++ + fj00292 475 YSVYVLENNPRGASIFSVNALDPD--VDQNAQVSYSLAEDTLqgapl 519 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG ++ ++ D+E+ + L+v A+D+ g fj00292 520 SSYVSINSDTGI----LYALRSFDYEQL--RDLQLWVTASDS-------G 556 gpplsstatvtitVl<-* pplss +++ Vl fj00292 557 DPPLSSNVSLSLFVL 571 PF00028.8.ls: domain 5 of 5, from 593 to 683: score 47.6, E = 3.8e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + +p G v+ v A+D+D +g+N+ ++Y++l+ +++g F+ fj00292 593 VELAPRSAEP-GYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFS 636 IdpdtGdnegiisttkp.LDREeifngeYeLtveAtDadpllasgggppl + +tG+ ++ ++ LDR + + +L+v ++D+ g+ppl fj00292 637 VGLHTGE----VRMARAlLDRDAL--KQ-SLVVAVQDH-------GQPPL 672 sstatvtitVl<-* s+t+t+t+ V fj00292 673 SATVTLTVAVA 683 PF00028.8.fs: domain 6 of 6, from 600 to 683: score 52.0, E = 2.7e-14 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D+D +g+N+ ++Y++l+ +++g F++ +tG+ fj00292 600 AEPGYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFSVGLHTGE- 643 egiisttkp.LDREeifngeYeLtveAtDadpllasgggpplsstatvti ++ ++ LDR + + +L+v ++D+ g+ppls+t+t+t+ fj00292 644 ---VRMARAlLDRDAL--KQ-SLVVAVQDH-------GQPPLSATVTLTV 680 tVl<-* V fj00292 681 AVA 683 //